I'm tryintg to sort the generated sequences from the .spec output with the following command and I use the flag to activate talaris:
~/tools/analysis/apps/gen_pepspec_pwm.py 1cka_spec.spec 3 0.1 binding-prot_score pepspec_background.binding-prot-0.1.pwm -corrections::restore_talaris_behavior
But I get error:
ERROR: talaris2013(.wts) requested, but -corrections::restore_talaris_behavior not set to true. This leads to a garbage scorefunction. Exiting.
I read some solutions advices to the similar problems from the forum. If I get it right , for the score functions I should use either talaris or REF , as the flag doesn't help in this case, I need to change all the REF to talaris2013 score fucntion script equals. But I have no idea how which files I should replace nor how I should edit those files.
Could anyone help me with this?
Thanks in advance.