I am performing protein-protein docking with multiple constraints. I applied the constraints in full atom mode with these two commands:
After running docking, I get an error saying "Can't read constraints from empty file!". While the constraint file is not empty. It is noteworthy to mention that if I use the same structure and the same constraint file with relax with the flag above, it would successfully run. But I am not sure why it cannot run with docking.
I am attaching docking xml, docking option and docking log.
Any suggestions would be really appreciated.