I am using pepspec to design a peptide inhibitor of a serine protease. I am using a structure of the enzyme, with a docked Arg, obtained from a crystal structure (so no Anchor Docking is needed). I want to design a peptide by adding residues to the N-terminal side of the anchored Arg. Previous pepspec, I repacked the structure with fixbb with:
When I run pepspec I got a Segfault. Attached is the ROSETTA_CRASH.log file. These are the flags I am using:
Am I missing something?
Thanks in advance,