Hi Rosetta team,
I am trying to generate some tertiary structures for a relatively large RNA (300+ nt) with rna_denovo. But I keep getting a strange error saying the nucleotides are not complementary:
[ ERROR ]: Caught exception:
[ ERROR ] UtilityExitException
ERROR: Not complementary at positions C 48 and G 53
I attached my secondary structure, fasta and ct file for the RNA. I wonder what's the cause of this problem. Thanks much.