I am trying to model a 514-nt long RNA structure using farfar2. My job failed with the following error
ERROR: Not complementary at positions A 8 and U 13
I do not understand this, A and U are complementary and I have checked both the input sequence and dot bracket files and I dont see any discrepancies. Attaching both inputs and the Rosie crash log file. Could someone please help me sort the error.