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farfar2 error

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farfar2 error
#1

Hello

I am trying to model a 514-nt long RNA structure using farfar2. My job failed with the following error

ERROR: Not complementary at positions A    8 and U   13

I do not understand this, A and U are complementary  and I have checked both the input sequence and dot bracket files and I dont see any discrepancies. Attaching both inputs and the Rosie crash log file. Could someone please help me sort the error.

Thank you

AttachmentSize
seq_fasta.txt534 bytes
dotbracket.txt515 bytes
ROSETTA_CRASH.log72.26 KB
Post Situation: 
Thu, 2021-10-07 23:10
debostuti

The sequence has to be lowercase. (Since Rosetta supports protein modeling too, in a sequence A indicates alanine.)

Fri, 2021-10-08 10:29
everyday847