# PIPER-FlexPepDock protocol file apply_ftresult.py missing

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PIPER-FlexPepDock protocol file apply_ftresult.py missing
#1

Hello,

I've been trying to run the PIPER-FlexPepDock pipeline in both ways, following the steps in the documentation page (https://www.rosettacommons.org/docs/latest/application_documentation/docking/flex-pep-dock), and using the scripts in the "tools/peptide docking" folder. But both cases need the script "apply_ftresults.py" which doesn't exist in the source. Where can I get this script or any equivalent?

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Thu, 2021-11-04 06:33
diasmarieli

Hello Mariela,

Some further details would be appreciated-

Are you trying to run the full rosetta protocol using one of the binaries like

FlexPepDocking.{ext}.{distribution/compiler}release

Such as FlexPepDocking.mpi.linuxgccrelease, or a mac binary, etc.?

Using any of these binaries should not rely on any external scripts, python or otherwise.

The scripts under tools/peptide_docking are for running another protocol called PIPER-FlexPepDock, and assumes you have the PIPER software (by schrodinger) installed and licensed.

You can see the full instructions for running the protocol in the README file located in the 'peptide_docking' folder you mentioned.

I hope this helps!

Fri, 2021-11-05 01:56
zivben

Hi zivben,