I've tried to design some miniproteins, by following up "Baker lab 2020, science" paper.
I want to use Rifgen in Rifdock to make disembodied amino acid contact.
But I don't know what flags to start.
They said the initial job of rifgen will take a long time.
On the Rifdock tutorial page, they said "to contact somebody doing some similar jobs and use their flag as a starting point"
So can somebody share your flags?