I read the rosetta tutorial for working with densities, available here:
In scenario 0, under the title "Density scoring terms in Rosetta" it is written that "Rosetta assesses agreement to density by computing the density that one would expect to see, given a model, and measuring the agreement of the expected and experimental density.".
The expected density is computing from the atom positions only right ? Since I am interested in converting an alphafold predicted model into a density map, I would like to get this expected density. How can I do that ?
In addition, what is tthe algorithm that computes this expected density ?