I am trying to reproduce the the results from this paper 'Automatic and accurate ligand structure determination guided by cryo-electron microscopy maps', but when I try to run the script from the paper (de3mo) i'm getting the following error:
Option matching -in:file:override_database_params not found in command line top-level context
AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS
I have installed the last version of Rosetta available for download - 2022.49 released on March 19, 2023,
In the paper is mentioned that it should work using weekly releases after February 5, 2023 (version 2023.6 or later) but when I tried to download this version i'm getting the folowing error
The requested URL /downloads/academic/2023/wk6 was not found on this server.
Apache/2.2.15 (Red Hat) Server at www.rosettacommons.org Port 443
Any help making this work is higly apreciated.