Hello,
I'm trying to install make_fragments.pl for Rosetta Abinitio. Has anyone had problems obtaining all of the elements for SAM?
The 3.5 version of SAM has:
target99
uniqueseq
but lacks:
predict-2nd
Does anyone know where to get SAM bundled with predict-2nd or is this a separate program?
Thanks,
Christy
I can't help you make fragments locally, but I can point out that the Robetta Server's fragments are perfectly compatible with Rosetta 3.0. (Admittedly that queue is a bit busy right now).
http://robetta.bakerlab.org/fragmentsubmit.jsp
> Hello,
>
> I'm trying to install make_fragments.pl for Rosetta Abinitio. Has anyone had problems obtaining all of the elements for SAM?
>
> The 3.5 version of SAM has:
> target99
> uniqueseq
>
> but lacks:
> predict-2nd
>
> Does anyone know where to get SAM bundled with predict-2nd or is this a separate program?
>
> Thanks,
> Christy
Thanks for the info on the server. I want to run quite a few structures, so I want to install make_fragments locally.
We are also having problems with JUFO. Does anyone know what version of JUFO works with Rosetta3.0?
Thanks,
Christy