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Installing Rosetta Abinitio make_fragments.pl

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Installing Rosetta Abinitio make_fragments.pl
#1

Hello,

I'm trying to install make_fragments.pl for Rosetta Abinitio. Has anyone had problems obtaining all of the elements for SAM?

The 3.5 version of SAM has:
target99
uniqueseq

but lacks:
predict-2nd

Does anyone know where to get SAM bundled with predict-2nd or is this a separate program?

Thanks,
Christy

Thu, 2009-09-17 09:20
ctaylor

I can't help you make fragments locally, but I can point out that the Robetta Server's fragments are perfectly compatible with Rosetta 3.0. (Admittedly that queue is a bit busy right now).

http://robetta.bakerlab.org/fragmentsubmit.jsp

Fri, 2009-09-18 06:53
smlewis

> Hello,
>
> I'm trying to install make_fragments.pl for Rosetta Abinitio. Has anyone had problems obtaining all of the elements for SAM?
>
> The 3.5 version of SAM has:
> target99
> uniqueseq
>
> but lacks:
> predict-2nd
>
> Does anyone know where to get SAM bundled with predict-2nd or is this a separate program?
>
> Thanks,
> Christy

Thanks for the info on the server. I want to run quite a few structures, so I want to install make_fragments locally.

We are also having problems with JUFO. Does anyone know what version of JUFO works with Rosetta3.0?

Thanks,
Christy

Fri, 2009-09-18 12:03
ctaylor