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error running rosetta3.1 demos

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error running rosetta3.1 demos

Hello, I compiled Rosetta3.1 on Ubuntu 8.2, the complie is fine no error report. Then I run some example under rosetta_demons/ directory according to the readme file in the directory, and I have errors:

for rosetta_demos/Ligand_Docking, the error is :

ERROR: Unable to open file: ./silent.out

ERROR:: Exit from: src/protocols/jobdist/JobDistributors.hh line: 825


for rosetta_demos/Docking, the error is:

ERROR: Option matching -dock_mcm not found in command line top-level context


I donot know what is the problem, did I miss something when I install Rosetta3.1?  I am new user of Rosetta, any one tell me what should I do to get rid of these errors?




Post Situation: 
Thu, 2010-10-21 20:43

"ERROR: Unable to open file: ./silent.out"


I would guess you are running the test in a directory for which you do not have write permission.  Rosetta is saying it can't write to that file; probably you don't have write access to the directory you're running in.




"ERROR: Option matching -dock_mcm not found in command line top-level context"

The documentation is out of date.  I believe dock_mcm is the default, so you no longer need to specify it.  If you'll examine rosetta_source/test/integration/tests/docking instead, you'll see that the option is commented out in the flags file for that test.

Fri, 2010-10-22 07:46

Thanks, problem solved.

Fri, 2010-10-22 18:48