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example scripts for comparative modeling

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example scripts for comparative modeling

Hi All,

I am completely new to Rosetta, so forgive me for the trivial questions. I would like to run comparative modeling with rosetta, does anybody has a good simple tutorial or script examples?

I am aware about the online manual info, but it is not detailed enough...

Every information will be highly appreciated!

Have a good day,

Fabian Glaser
Technion, Israel

Post Situation: 
Sun, 2011-02-27 21:50


I currently run into the same problem. So there is an example in test/integration/tests/threading, however the output file is just a silent out. The manual suggests to use the ./bin/score.linuxgccrelease app but this isn't part of the bundle. At least if you compile rosetta_source this app is missing. Does anybody has an idea how to extract the pdb file?


Sun, 2011-03-20 01:04

I just figured out at least how to extract the PDB file:

path/bin/extract_pdbs.macosgccrelease -in::file::silent filename.out -database path/rosetta_database/

Sun, 2011-03-20 10:32