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Loop Insertion/Extension using rosetta suite

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Loop Insertion/Extension using rosetta suite
#1

Hi,

Is there any way to model loop extension or loop insertion using rosetta suite ??

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Mon, 2011-02-28 04:45
bharat_46010

What exactly do you want to do?

If you want to add/subtract residues to loops, then you can manually edit the PDB to have more/fewer residues, then use the "build_initial" option in the loop_modeling executeable to remodel it.

I'm not sure what "loop insertion" means, but fragment insertion + CCD closure (a standard mode for the loop_modeling executable might do it.

Mon, 2011-02-28 18:55
smlewis