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How to use new functions introduced in 2.0?

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How to use new functions introduced in 2.0?
#1

I would like to use new functions introduced in PyRosetta2.0 (based on Rosetta3.2).

How and where can I find such functions and make them run?

For example, when I try to run "matcher" application and "comparative modeling" application how can I find/set commands and options for them in PyRosetta2.0?
I see folders named "comparative_modeling" and "match" in the build/rosetta/protocols folder.

I am running PyRosetta on Windows XP. I have never run Rosetta3.2 on the same machine because the compilation using cygwin/MinGW is not done properly.

Any information would be helpful.

Thank you in advance.

Post Situation: 
Wed, 2011-03-02 22:10
mn