I would like to use new functions introduced in PyRosetta2.0 (based on Rosetta3.2).
How and where can I find such functions and make them run?
For example, when I try to run "matcher" application and "comparative modeling" application how can I find/set commands and options for them in PyRosetta2.0?
I see folders named "comparative_modeling" and "match" in the build/rosetta/protocols folder.
I am running PyRosetta on Windows XP. I have never run Rosetta3.2 on the same machine because the compilation using cygwin/MinGW is not done properly.
Any information would be helpful.
Thank you in advance.