I'm running some modeling with symmetry docking protocol (SymDock.mpi.macosgccrelease). I noticed that some of my runs ended with an error message such as this (the exact of seconds of timeout varies):
ERROR: quick exit from job-distributor due to flag jd2::XXX and timeout of 104.5 seconds
ERROR:: Exit from: src/protocols/jd2/MPIFileBufJobDistributor.cc line: 318
This error appeared to be random that it could happen at any point of the computation and if I re-ran the computation with the same inputs and flags, the error could just go away or happen at a different point.
This error also does not affect the decoys created.
My question is if there is a flag I can set to ignore the timeout?