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dihedral_between_bonded_children: atoms are not both my children!

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dihedral_between_bonded_children: atoms are not both my children!
#1
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Hi, while running a homology model on Rosetta 3.4, I get an error

ERROR: Atom_::dihedral_between_bonded_children: atoms are not both my children!
ERROR:: Exit from: src/core/kinematics/tree/Atom_.cc line: 407

Any insights on why that might be?
Thank you.

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Fri, 2013-04-05 06:40
pdbb
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You're trying to calculate a dihedral angle between atoms that aren't connected by bonds (possibly aren't connected by AtomTree bonds).

Are you using any dihedral constraints? Do you have any noncanonicals?

Fri, 2013-04-05 09:56
smlewis
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Hi, thank you for the reply.

I think my issue is close to this one: https://www.rosettacommons.org/content/error-atomdihedralbetweenbondedch...

It runs fine with -out:nstruct 5, but crushes with -out:nstruct 10

I am not using dihedral constraint or noncanonicals.

Thanks

Fri, 2013-04-05 12:13
pdbb
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Unfortunately we weren't able to duplicate that one in the other thread either...are you also using the demo or using your own system?

Fri, 2013-04-05 13:54
smlewis