I have tried Fragment Picker in Rosetta 3, and get the following errors:
ERROR: query_prediction -> total_residue() == query_len
ERROR: Exit form: src/protocols/frag_picker/scores/SecondarySimilarity.cc line: 132
Could you please give me some advices on how to solve the problems? Thank you very much.
You are using files with protein of different lengths. The total length of your query sequence, and the length of some secondary structure prediction you have supplied for that sequence, are not the same. More specifically than that I can't tell you without more data.