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Alanine Scanning

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Alanine Scanning


I'm trying to run alanine scanning on a structure using the RosettaScripts program. I've used the attached xml input, gleaned from looking through the forums for alanine scanning, with the following command-line:

/bin/rosetta_scripts.linuxgccrelease -s 2K2I.pdb.clean -use_input_sc -nstruct 1 -jd2:ntrials 1 -database rosetta_database/ -ex1 -ex2 -parser:protocol ala_scan.xml -out:file:2K2I.pdb.clean.out -out:file:scorefile

It seems to run just fine, but I don't get a .report output file at all. I get some ddG values in the log file, but no .report file as advertised by the RosettaScripts documentation. Am I doing something silly?

Many thanks!


ala_scan_xml.txt611 bytes
Post Situation: 
Mon, 2013-08-05 07:02

No, the ".report" file that the documentation is talking about is the tracer output (log file). Specifically, it's the protocols.rosetta_scripts.ParsedProtocol.REPORT tracer channel in the log file.

Mon, 2013-08-05 11:52