I'm trying to do a test run of matdes_design with the following flags:
-database /local/databases/minirosetta/ -s 3N79_edit.pdb -symmetry_definition O3.sym -ex1 -ex2 -holes::dalphaball ../../../DAlphaBall_new/src/DAlphaBall.icc -matdes::pdbID 3n79 -matdes::prefix O3_ -matdes::num_subs_building_block 3 -matdes::num_subs_total 24 -matdes::radial_disp -20 -matdes::angle 6 -ignore_unrecognized_res True -matdes::design::grid_size_angle 2 -matdes::design::grid_size_radius 2 -matdes::design::grid_nsamp_angle 5 -matdes::design::grid_nsamp_radius 11
However, I run into the following error:
ERROR: Value of inactive option accessed: -out:file:o
So I added -out:file:o O3_3n79 to the flags and tried running the application again, this time I got the following errors:
[ERROR] EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
ERROR: Could not make O3_3n79/default.out
I'm not sure if I fixed the first error at all.... And I don't know how to fix the new errors. Please help!
Thanks a lot!