I have clustered 1,000 decoys by using cluster application in Rosetta with flags below.
I appreciate with its quick result, however, I wonder with the -cluster:sort_groups_by_energy option. I'd like to sort the clusters by score, but the result seems that the clusters are not sorted by the score, It just only sorted the decoys in each cluster by score. Why?, How does it sort clusters?
I have attached the summary file of clustering.