I have a couple of questions regarding Rosetta clustering and Calibur and I wasn't able to find an answer to them on the site
Which type of clustering algorithm is used in Rosetta clustering? EDIT:I meant to ask- when calculating the RMSD is the superimposing done pairwise in Rosetta clustering?
It seems that threshold (in calibur) and radius (in Rosetta) have a different meaning. Is there anyway of gettng the 2 programs to output equivalent results(Assuming a small sample of decoys - 400 decoys) or at least have both of them specify the same cluster radius?