I want to ask a question.
I have some protein structure and i want to calculate their score and chose the one which has lowest score. I used "score_jd2.mpi.linuxgccrelease" to get score.
But the output file pdb has different Hydrogen coordinate even I used the command "no_optH true" to keep the Hydrogen atom position.
I dont understand why it happened.
and which structure should I use for following job? the inital structure of the output pdb after running score command?
Thank you so much.
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