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compiling Rosetta 3.5 on cluster

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compiling Rosetta 3.5 on cluster

Hi all,

I was trying to compile Rosetta on a cluster x86_64, kernel 2.6.18 and got the error below. I used: python external/scons-local/
Anybody can help?
I really appreciate,

scons: Reading SConscript files ...
Traceback (most recent call last):
File "/home/tigerous/Rosetta/main/source/SConstruct", line 150, in main
build = SConscript("tools/build/")
File "/home/tigerous/Rosetta/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/", line 614, in __call__
return method(*args, **kw)
File "/home/tigerous/Rosetta/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/", line 551, in SConscript
return _SConscript(self.fs, *files, **subst_kw)
File "/home/tigerous/Rosetta/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/", line 260, in _SConscript
exec _file_ in call_stack[-1].globals
File "/home/tigerous/Rosetta/main/source/tools/build/", line 421, in ?
build = setup()
File "/home/tigerous/Rosetta/main/source/tools/build/", line 412, in setup
build.options_requested, build.options = setup_build_options()
File "/home/tigerous/Rosetta/main/source/tools/build/", line 40, in setup_build_options
defaults = Settings.load("basic.options")
File "/home/tigerous/Rosetta/main/source/tools/build/", line 86, in load
execfile(file, settings)
File "basic.options", line 23
osx_version = int(uname[2][0:2]) if uname[0] == "Darwin" else 0
SyntaxError: invalid syntax
scons: done reading SConscript files.
scons: Building targets ...
scons: `bin' is up to date.
scons: done building targets.

Post Situation: 
Wed, 2015-01-07 18:37

This is because you are running an older version of Python, probably python2.4. (You can check by doing a "python --version") The line that's giving you an error requires python2.5 or later. (But don't use any of the Python 3.X series.)

You may already have a later version of python installed. Try using "python2.7" "python2.6" or "python2.5" instead of just plain "python" when invoking the scons command to specify a later version, rather than the system default.

Alternatively, talk to your cluster administrator to see if they have an updated python version installed somewhere.

Fri, 2015-01-09 10:48

Using Python2.7 worked.
Thanks Rocco

Mon, 2015-01-12 20:04