I am trying to perform a B3protein design tests using rosettascript (rosetta demo model). I have 3 designable positions and I am interested in the functionalities of the movers:"RandomMutation" and "GreedyOptMutationMover"
Using these movers, none of my design positions have been taken into account as a designable! In the log file, there are warnings
indicating that there is no design position.
Does anyone have any ideas?
I have attached the log file, the resfile, input pdb I have used.
My command line is:
rosetta_scripts.default.linuxgccrelease -database $rosetta_database\
-in:file:s $startpdb \
-parser:script_vars resfile=resfile_gdOptMC \
-score:weights mm_std \
-out:file:scorefile gdOptMC.fasc \
-out:file:silent gdOptMC.dat \
-resfile resfile_gdOptMC \
-parser:protocol gdOptMC.xml \
-multi_cool_annealer 10 \
-in:file:fullatom true \
-out:file:fullatom true \
-no_optH false \
-packing::pack_missing_sidechains false \
-packing::extrachi_cutoff 0 \