Hi Dear Rosetta Users/Developer
I have 1000 3-mer peptide sequence like as GSH, SAD, GPN, PWW, ...
Now, I would like to build them in a fast way using Rosetta scripts.
Would you please advise me on how to do it?
I will be grateful for any help.
Best,
Berk.
Category:
Post Situation:
You can use PyRosetta to get the job done!
here is the piece of code for that,
-----------------------------------------------
import sys, os
from rosetta import *
rosetta.init()
peptide = Pose()
peptide = pose_from_sequence(str(sys.argv[1]),"fa_standard")
peptide.dump_pdb("peptide.pdb")
--------------------------------------------------------
Add a loop inside this python code or use shell for loop to pass the sequences.
best!
You may also be able to use the BuildPeptide application (https://www.rosettacommons.org/docs/latest/application_documentation/uti...), if you want to stick with the commandline version of Rosetta.