This is the command I am trying to execute (taken from here: https://www.rosettacommons.org/docs/latest/application_documentation/ana..., in the Preminimization of the Input Structures paragraph, in High Resolution Protocol):
-in:file:s "input.pdb" -in:file:fullatom -ignore_unrecognized_res \
-fa_max_dis 9.0 -ddg::harmonic_ca_tether 0.5 -score:weights standard \
-ddg::constraint_weight 1.0 -ddg::out_pdb_prefix min_cst_0.5 \
-ddg::sc_min_only false \
-score:patch $ROSETTA3_DB/scoring/weights/score12.wts_patch > mincst.log
I get the following error:
ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL; has it been added to general_properties.list?
The "input.pdb" file was obtained by running tools/protein_tools/scripts/clean_pdb.py on a crystallographic pdb files, selecting a single chain.
I have no idea what this error means. What can I do to fix this?
I am using Rosetta 2015.31.