I am working on trying to incorporate PCS into a full atom relax protocol. I have been trying to use the PCS energy method in rosetta which uses a broker file. Is it possible to use a broker file with relax?
I am using the relax application and the claimer PseudocontactShiftEnergyController. In addition to the normal arguments for a relax I passed these arguments for the broker "-broker::setup broker.txt -run:protocol broker -overwrite" as well as used this argument "-score:weights file.wts" and set the pcs weight in the file. When I ran this the error indicated that the broker file was not being read.
Thank you in advance and if you need any information let me know.