I was following the antibody modeling tutorial on Nature Protocols paper and I wasn’t successful. I followed the tutorial in the Supplementary Material, and got the following error right after performing blastp query. Blast+ was performed well and produced output alright.
libc++abi.dylib: terminating with uncaught exception of type std::out_of_range: basic_string
 37692 abort $ROSETTA_BIN/antibody.macosclangrelease -fasta antibody.fasta 95 90
Mac OS version: 10.12.3
Rosetta Version: 3.7 (2016.34)
Blast+ version: 2.6.0
LLVM version: 8.0.0 (clang-800.0.42.1)
And, here's the files that I used including log files: