Dear Rosetta Community,
I am designing a protein and this is the result of my abinitio fold. I generated 24,000 structures and the SCORE vs RMSD plot is attached.
As you can see, I do not have a "clear" funnel shaped plot, but I do have several low scoring and low RMSD structures.
* Is this considered a funnel shaped graph? given that I have "some" and "not a lot" of low scoring low RMSD structures?
*is this protein worth expressing? or will it just prefer to fold into a low scoring high RMSD structure?
*should I try to modify it to get more low score low RMSD hits? or this is enough?
I hope I am communicating my idea and questions clearly, I am still new to rosetta and working to gain experience.