-in -file #-native 2eu2_A_relax_0001.pdb -fasta 2EU2_CM.fasta #-vall ~/rosetta_src_2021.16.61629_bundle/main/database/sampling/filtered.vall.dat.2006-05-05.gz -vall ~/rosetta_src_2021.16.61629_bundle/main/tools/fragment_tools/vall.jul19.2011.gz ~/rosetta_src_2021.16.61629_bundle/main/database/sampling/filtered.vall.dat.2006-05-05.gz -path #-database ~/rosetta_src_2021.16.61629_bundle/main/database/sampling/filtered.vall.dat.2006-05-05.gz -database ~/rosetta_src_2021.16.61629_bundle/main/database/ -overwrite -corrections -beta_nov16 true #-multithreading # -total_threads 4 # -interaction_graph_threads 1 -frags -ss_pred 2eu2.psipred.ss2 psipred #2eu2.sam.ss2 sam 2eu2.jufo.ss2 jufo #-j 4 #-filter_JC true #-quota_protocol true -bounded_protocol true -frag_sizes 3 9 -n_candidates 200 -n_frags 200 -write_scores true #-write_rama_tables true #-write_ca_coordinates false #-nonlocal_pairs true #-nonlocal #-min_contacts_per_res 4 #-relax_input true -describe_fragments frags.dsc -scoring -config simple.wghts -contacts -min_seq_sep 3 -dist_cutoffs 8 -picking #-selecting_rule QuotaSelector #-quota_config_file Quota.def #-type ca sg nd ne #-selecting_scorefxn beta_nov16 -constraints -cst_file HisZn.fa_cst #-run #-nproc 4 -out -level 300