terminate called after throwing an instance of 'std::length_error' what(): vector::_M_default_append core.init: (0) Rosetta version: rosetta.source.release-171 r171 2018.09+release.333d9969977 333d99699777cd6a50d1c1736bacd689f8f1d1df https://www.rosettacommons.org 2018-02-27T20:08:15.525183 core.init: (0) command: MakeRotLib.mpi.linuxgccrelease -database /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/gcc7.3/openmpi3.1/rosetta/3.9/database -options_file C40_rot_lib_options_-60_-40.in core.init: (0) 'RNG device' seed mode, using '/dev/urandom', seed=1837608308 seed_offset=0 real_seed=1837608308 core.init.random: (0) RandomGenerator:init: Normal mode, seed=1837608308 RG_type=mt19937 protocols.make_rot_lib.MakeRotLibMover: (0) Creating score function... core.scoring.ScoreFunctionFactory: (0) SCOREFUNCTION: ref2015 core.scoring.etable: (0) Starting energy table calculation core.scoring.etable: (0) smooth_etable: changing atr/rep split to bottom of energy well core.scoring.etable: (0) smooth_etable: spline smoothing lj etables (maxdis = 6) core.scoring.etable: (0) smooth_etable: spline smoothing solvation etables (max_dis = 6) core.scoring.etable: (0) Finished calculating energy tables. basic.io.database: (0) Database file opened: scoring/score_functions/hbonds/ref2015_params/HBPoly1D.csv basic.io.database: (0) Database file opened: scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv basic.io.database: (0) Database file opened: scoring/score_functions/hbonds/ref2015_params/HBEval.csv basic.io.database: (0) Database file opened: scoring/score_functions/hbonds/ref2015_params/DonStrength.csv basic.io.database: (0) Database file opened: scoring/score_functions/hbonds/ref2015_params/AccStrength.csv core.chemical.GlobalResidueTypeSet: (0) Finished initializing fa_standard residue type set. Created 603 residue types core.chemical.GlobalResidueTypeSet: (0) Total time to initialize 0.631468 seconds. basic.io.database: (0) Database file opened: scoring/score_functions/rama/fd/all.ramaProb basic.io.database: (0) Database file opened: scoring/score_functions/rama/fd/prepro.ramaProb basic.io.database: (0) Database file opened: scoring/score_functions/omega/omega_ppdep.all.txt basic.io.database: (0) Database file opened: scoring/score_functions/omega/omega_ppdep.gly.txt basic.io.database: (0) Database file opened: scoring/score_functions/omega/omega_ppdep.pro.txt basic.io.database: (0) Database file opened: scoring/score_functions/omega/omega_ppdep.valile.txt basic.io.database: (0) Database file opened: scoring/score_functions/P_AA_pp/P_AA basic.io.database: (0) Database file opened: scoring/score_functions/P_AA_pp/P_AA_n core.scoring.P_AA: (0) shapovalov_lib::shap_p_aa_pp_smooth_level of 1( aka low_smooth ) got activated. basic.io.database: (0) Database file opened: scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop protocols.evaluation.ChiWellRmsdEvaluatorCreator: (0) Evaluation Creator active ... protocols.make_rot_lib.MakeRotLibJobInputter: (0) Instantiate MakeRotLibJobInputter [gra-login3:26139] *** Process received signal *** [gra-login3:26139] Signal: Aborted (6) [gra-login3:26139] Signal code: (-6) [gra-login3:26139] [ 0] /cvmfs/soft.computecanada.ca/nix/store/63pk88rnmkzjblpxydvrmskkc8ci7cx6-glibc-2.24/lib/libc.so.6(+0x33280)[0x2ac7e252d280] [gra-login3:26139] [ 1] /cvmfs/soft.computecanada.ca/nix/store/63pk88rnmkzjblpxydvrmskkc8ci7cx6-glibc-2.24/lib/libc.so.6(gsignal+0x104)[0x2ac7e252d214] [gra-login3:26139] [ 2] /cvmfs/soft.computecanada.ca/nix/store/63pk88rnmkzjblpxydvrmskkc8ci7cx6-glibc-2.24/lib/libc.so.6(abort+0x16a)[0x2ac7e252e67a] [gra-login3:26139] [ 3] /cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib/libstdc++.so.6(+0x96567)[0x2ac7e1c9e567] [gra-login3:26139] [ 4] /cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib/libstdc++.so.6(+0xa1e06)[0x2ac7e1ca9e06] [gra-login3:26139] [ 5] /cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib/libstdc++.so.6(+0xa1e51)[0x2ac7e1ca9e51] [gra-login3:26139] [ 6] /cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib/libstdc++.so.6(+0xa2084)[0x2ac7e1caa084] [gra-login3:26139] [ 7] /cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib/libstdc++.so.6(_ZSt20__throw_length_errorPKc+0x3d)[0x2ac7e1ca0cb8] [gra-login3:26139] [ 8] /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/gcc7.3/openmpi3.1/rosetta/3.9/bin/../lib/libprotocols_f.5.so(_ZN9protocols12make_rot_lib21MakeRotLibOptionsDataC2ENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x33ee)[0x2ac7d5ecb07e] [gra-login3:26139] [ 9] /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/gcc7.3/openmpi3.1/rosetta/3.9/bin/../lib/libprotocols_f.5.so(_ZN9protocols12make_rot_lib21MakeRotLibJobInputterC2Ev+0x541)[0x2ac7d5eabcd1] [gra-login3:26139] [10] /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/gcc7.3/openmpi3.1/rosetta/3.9/bin/../lib/libprotocols_f.5.so(_ZNK9protocols12make_rot_lib28MakeRotLibJobInputterCreator18create_JobInputterEv+0x1e)[0x2ac7d5eac1ce] [gra-login3:26139] [11] /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/gcc7.3/openmpi3.1/rosetta/3.9/bin/../lib/libprotocols.1.so(_ZN9protocols3jd218JobInputterFactory27get_JobInputter_from_stringERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x178)[0x2ac7dad10c78] [gra-login3:26139] [12] /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/gcc7.3/openmpi3.1/rosetta/3.9/bin/../lib/libprotocols.1.so(_ZN9protocols3jd218JobInputterFactory19get_new_JobInputterEv+0x215d)[0x2ac7dad13dbd] [gra-login3:26139] [13] /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/gcc7.3/openmpi3.1/rosetta/3.9/bin/../lib/libprotocols.1.so(_ZN9protocols3jd221JobDistributorFactory19create_job_inputterEv+0x28)[0x2ac7dad0e168] [gra-login3:26139] [14] /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/gcc7.3/openmpi3.1/rosetta/3.9/bin/../lib/libprotocols.1.so(_ZN9protocols3jd214JobDistributor7init_jdEv+0x25a)[0x2ac7dad0719a] [gra-login3:26139] [15] /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/gcc7.3/openmpi3.1/rosetta/3.9/bin/../lib/libprotocols.1.so(_ZN9protocols3jd214JobDistributorC1Ev+0xc3)[0x2ac7dad0d3d3] [gra-login3:26139] [16] /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/gcc7.3/openmpi3.1/rosetta/3.9/bin/../lib/libprotocols.1.so(_ZN9protocols3jd224FileSystemJobDistributorC1Ev+0x27)[0x2ac7dacf87c7] [gra-login3:26139] [17] /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/gcc7.3/openmpi3.1/rosetta/3.9/bin/../lib/libprotocols.1.so(_ZN9protocols3jd221JobDistributorFactory22create_job_distributorEv+0x1168)[0x2ac7dad0f528] [gra-login3:26139] [18] /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/gcc7.3/openmpi3.1/rosetta/3.9/bin/../lib/libprotocols.1.so(_ZN9protocols3jd214JobDistributor12get_instanceEv+0x14f)[0x2ac7dad0d8df] [gra-login3:26139] [19] MakeRotLib.mpi.linuxgccrelease[0x402f85] [gra-login3:26139] [20] /cvmfs/soft.computecanada.ca/nix/store/63pk88rnmkzjblpxydvrmskkc8ci7cx6-glibc-2.24/lib/libc.so.6(__libc_start_main+0xf0)[0x2ac7e251a2e0] [gra-login3:26139] [21] MakeRotLib.mpi.linuxgccrelease[0x4032ca] [gra-login3:26139] *** End of error message ***