Rosetta Antibody script [Python, version 2.0]. Starting... Output prefix: grafting/ Blast database: /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database Antibody database: /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/antibody_database rosetta_bin: /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/main/source/bin [platform: linuxgccrelease] rosetta_database: /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/main/database Using full antibody database (no homolog exclusion) Idealize: False Relax: True Light chain: ENVLTQSPAIMSASPGEKVTMTCRASSSVSSSYLHWYQQKSGASPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSVEAEDAATYYCQQYSGYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC Heavy chain: AVQLEQSGPELKKPGETVKISCKASGYTFTNYGMNWVKQAPGKGLKWMGWINTYTGEPTYADDFKERFAFSLETSASAAYLQINNLKNEDTATYFCARDYYGSTYPYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGG L1 detected: RASSSVSSSYLH ( 12 residues ) L3 detected: QQYSGYPYT ( 9 residues ) L2 detected: STSNLAS ( 7 residues ) FR_L1: ENVLTQSPAIMSASPGEKVTMTC FR_L2: WYQQKSGASPKLWIY FR_L3: GVPARFSGSGSGTSYSLTISSVEAEDAATYYC FR_L4: FGGGTKLEIKRA L segments: ENVLTQSPAIMSASPGEKVTMTC RASSSVSSSYLH WYQQKSGASPKLWIY STSNLAS GVPARFSGSGSGTSYSLTISSVEAEDAATYYC QQYSGYPYT FGGGTKLEIKRA H1 detected: GYTFTNYGMN ( 10 residues ) H3 detected: DYYGSTYPYYAMDY ( 14 residues ) H2 detected: WINTYTGEPTYADDFKE ( 17 residues ) FR_H1: AVQLEQSGPELKKPGETVKISCKAS FR_H2: WVKQAPGKGLKWMG FR_H3: RFAFSLETSASAAYLQINNLKNEDTATYFCAR FR_H4: WGQGTTVTVSSA H segments: AVQLEQSGPELKKPGETVKISCKAS GYTFTNYGMN WVKQAPGKGLKWMG WINTYTGEPTYADDFKE RFAFSLETSASAAYLQINNLKNEDTATYFCAR DYYGSTYPYYAMDY WGQGTTVTVSSA CDR: { "FRH": "ELKKPGETVKISCKASWVKQKWMGRFAFSLETSASAAYLQINNLKNEDTATYFCARWGQGTTV", "FRL": "IMSASPGEKVTMTCWYQQKLWIYGVPARFSGSGYSLTISSVEAEDAATYYCFGGGTKL", "FR_H1": "AVQLEQSGPELKKPGETVKISCKAS", "FR_H2": "WVKQAPGKGLKWMG", "FR_H3": "RFAFSLETSASAAYLQINNLKNEDTATYFCAR", "FR_H4": "WGQGTTVTVSSA", "FR_L1": "ENVLTQSPAIMSASPGEKVTMTC", "FR_L2": "WYQQKSGASPKLWIY", "FR_L3": "GVPARFSGSGSGTSYSLTISSVEAEDAATYYC", "FR_L4": "FGGGTKLEIKRA", "H1": "GYTFTNYGMN", "H2": "WINTYTGEPTYADDFKE", "H3": "DYYGSTYPYYAMDY", "L1": "RASSSVSSSYLH", "L2": "STSNLAS", "L3": "QQYSGYPYT", "heavy": "AVQLEQSGPELKKPGETVKISCKASGYTFTNYGMNWVKQAPGKGLKWMGWINTYTGEPTYADDFKERFAFSLETSASAAYLQINNLKNEDTATYFCARDYYGSTYPYYAMDYWGQG", "light": "ENVLTQSPAIMSASPGEKVTMTCRASSSVSSSYLHWYQQKSGASPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSVEAEDAATYYCQQYSGYPYTFGGG", "light_heavy": "ENVLTQSPAIMSASPGEKVTMTCRASSSVSSSYLHWYQQKSGASPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSVEAEDAATYYCQQYSGYPYTFGGGAVQLEQSGPELKKPGETVKISCKASGYTFTNYGMNWVKQAPGKGLKWMGWINTYTGEPTYADDFKERFAFSLETSASAAYLQINNLKNEDTATYFCARDYYGSTYPYYAMDYWGQG", "numbering_H": { "1": "A", "10": "E", "100": "T", "100A": "Y", "100B": "P", "100C": "Y", "100D": "Y", "100E": "A", "100F": "M", "101": "D", "102": "Y", "103": "W", "104": "G", "105": "Q", "106": "G", "107": "T", "108": "T", "109": "V", "11": "L", "110": "T", "111": "V", "112": "S", "113": "S", "114": "A", "12": "K", "13": "K", "14": "P", "15": "G", "16": "E", "17": "T", "18": "V", "19": "K", "2": "V", "20": "I", "21": "S", "22": "C", "23": "K", "24": "A", "25": "S", "26": "G", "27": "Y", "28": "T", "29": "F", "3": "Q", "30": "T", "31": "N", "32": "Y", "33": "G", "34": "M", "35": "N", "36": "W", "37": "V", "38": "K", "39": "Q", "4": "L", "40": "A", "41": "P", "42": "G", "43": "K", "44": "G", "45": "L", "46": "K", "47": "W", "48": "M", "49": "G", "5": "E", "50": "W", "51": "I", "52": "N", "52A": "T", "53": "Y", "54": "T", "55": "G", "56": "E", "57": "P", "58": "T", "59": "Y", "6": "Q", "60": "A", "61": "D", "62": "D", "63": "F", "64": "K", "65": "E", "66": "R", "67": "F", "68": "A", "69": "F", "7": "S", "70": "S", "71": "L", "72": "E", "73": "T", "74": "S", "75": "A", "76": "S", "77": "A", "78": "A", "79": "Y", "8": "G", "80": "L", "81": "Q", "82": "I", "82A": "N", "82B": "N", "82C": "L", "83": "K", "84": "N", "85": "E", "86": "D", "87": "T", "88": "A", "89": "T", "9": "P", "90": "Y", "91": "F", "92": "C", "93": "A", "94": "R", "95": "D", "96": "Y", "97": "Y", "98": "G", "99": "S" }, "numbering_L": { "1": "E", "10": "I", "100": "G", "101": "G", "102": "T", "103": "K", "104": "L", "105": "E", "106": "I", "107": "K", "108": "R", "109": "A", "11": "M", "12": "S", "13": "A", "14": "S", "15": "P", "16": "G", "17": "E", "18": "K", "19": "V", "2": "N", "20": "T", "21": "M", "22": "T", "23": "C", "24": "R", "25": "A", "26": "S", "27": "S", "28": "S", "29": "V", "3": "V", "30": "S", "30A": "S", "31": "S", "32": "Y", "33": "L", "34": "H", "35": "W", "36": "Y", "37": "Q", "38": "Q", "39": "K", "4": "L", "40": "S", "41": "G", "42": "A", "43": "S", "44": "P", "45": "K", "46": "L", "47": "W", "48": "I", "49": "Y", "5": "T", "50": "S", "51": "T", "52": "S", "53": "N", "54": "L", "55": "A", "56": "S", "57": "G", "58": "V", "59": "P", "6": "Q", "60": "A", "61": "R", "62": "F", "63": "S", "64": "G", "65": "S", "66": "G", "67": "S", "68": "G", "69": "T", "7": "S", "70": "S", "71": "Y", "72": "S", "73": "L", "74": "T", "75": "I", "76": "S", "77": "S", "78": "V", "79": "E", "8": "P", "80": "A", "81": "E", "82": "D", "83": "A", "84": "A", "85": "T", "86": "Y", "87": "Y", "88": "C", "89": "Q", "9": "A", "90": "Q", "91": "Y", "92": "S", "93": "G", "94": "Y", "95": "P", "96": "Y", "97": "T", "98": "F", "99": "G" } } Running blastp cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.FRL -query FRL.fasta -out FRL.align -evalue 1e-05 -matrix BLOSUM62 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2w9e_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ken_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3i50_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1baf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3klh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1t03_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1n6q_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1n5y_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3cfe_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3uaj_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1j5o_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1hys_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1kyo_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1kcr_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2qad_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb3hpl_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3gb7_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fb8_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3fb7_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fb6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3f7y_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3f7v_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3f5w_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2itc_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hjf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2boc_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1bvl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3kj4_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3raj_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1u8p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1u8o_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1jnn_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnl_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1acy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2jix_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2arj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nsn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2w9e_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ken_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3i50_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1baf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3klh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1t03_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1n6q_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1n5y_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3cfe_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3uaj_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1j5o_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1hys_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1kyo_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1kcr_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2qad_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb3hpl_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3gb7_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fb8_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3fb7_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fb6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3f7y_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3f7v_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3f5w_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2itc_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hjf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2boc_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1bvl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3kj4_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3raj_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1u8p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1u8o_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1jnn_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnl_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1acy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2jix_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2arj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nsn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 filtering by sequence identity... filtering by sequence identity... Filter outlier, removing:pdb1pg7_chothia.pdb Filter outlier, removing:pdb1ngx_chothia.pdb Filter outlier, removing:pdb1pg7_chothia.pdb Filter outlier, removing:pdb1b2w_chothia.pdb Filter outlier, removing:pdb1ngx_chothia.pdb filtering by sequence length... filtering by sequence length... FRL template: pdb1mim_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.FRH -query FRH.fasta -out FRH.align -evalue 1e-05 -matrix BLOSUM62 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3sm5_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3lqa_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2op4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2ntf_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2vdn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb3p30_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1jnn_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnl_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yuh_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2w9e_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3rif_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ri5_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3rhw_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hpl_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3gb7_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fb8_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3fb7_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fb6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3f7y_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3f7v_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3f5w_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2itc_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hjf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2boc_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2dtg_chothia.pdb resolution:3.8 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3piq_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3mj9_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3mj8_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb4dag_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb1jnh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3sm5_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3lqa_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2op4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2ntf_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2vdn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb3p30_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1jnn_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnl_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yuh_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2w9e_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3rif_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ri5_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3rhw_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hpl_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3gb7_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fb8_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3fb7_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fb6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3f7y_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3f7v_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3f5w_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2itc_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hjf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2boc_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2dtg_chothia.pdb resolution:3.8 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3piq_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3mj9_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3mj8_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb4dag_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb1jnh_chothia.pdb resolution:2.9 filtering by sequence identity... filtering by sequence identity... Filter outlier, removing:pdb1ocw_chothia.pdb Filter outlier, removing:pdb1ngx_chothia.pdb Filter outlier, removing:pdb1pg7_chothia.pdb Filter outlier, removing:pdb1rmf_chothia.pdb Filter outlier, removing:pdb1ocw_chothia.pdb Filter outlier, removing:pdb1b2w_chothia.pdb Filter outlier, removing:pdb1ngx_chothia.pdb Filter outlier, removing:pdb1pg7_chothia.pdb Filter outlier, removing:pdb1rmf_chothia.pdb filtering by sequence length... filtering by sequence length... FRH template: pdb2adf_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.light -query light.fasta -out light.align -evalue 1e-05 -matrix BLOSUM62 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ken_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2w9e_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3i50_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3uaj_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1baf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qad_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1acy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3klh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1t03_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1n6q_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1n5y_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1u8p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1u8o_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hpl_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3gb7_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fb8_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3fb7_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fb6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3f7y_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3f7v_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3f5w_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2itc_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hjf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2boc_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1bvl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nsn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1j5o_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1hys_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb1kyo_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1zlw_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1op5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2jix_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hfm_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1jnn_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnl_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3cfe_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ken_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2w9e_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3i50_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3uaj_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1baf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qad_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1acy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3klh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1t03_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1n6q_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1n5y_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1u8p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1u8o_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hpl_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3gb7_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fb8_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3fb7_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fb6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3f7y_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3f7v_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3f5w_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2itc_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hjf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2boc_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1bvl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nsn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1j5o_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1hys_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb1kyo_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1zlw_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1op5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2jix_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hfm_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1jnn_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnl_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3cfe_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 filtering by sequence identity... filtering by sequence identity... filtering by sequence length... filtering by sequence length... light template: pdb1v7m_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.heavy -query heavy.fasta -out heavy.align -evalue 1e-05 -matrix BLOSUM62 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3sm5_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3rif_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ri5_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3rhw_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2dtg_chothia.pdb resolution:3.8 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3lqa_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yuh_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3mj9_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3mj8_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1jnh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2op4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2ntf_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2vdn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3piq_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1adq_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3p30_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2w9e_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2vit_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vis_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vir_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3raj_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3sm5_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3rif_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ri5_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3rhw_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2dtg_chothia.pdb resolution:3.8 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3lqa_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yuh_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3mj9_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3mj8_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1jnh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2op4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2ntf_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2vdn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3piq_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1adq_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3p30_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2w9e_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2vit_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vis_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vir_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3raj_chothia.pdb resolution:3.0 filtering by sequence identity... filtering by sequence identity... filtering by sequence length... filtering by sequence length... heavy template: pdb3ojd_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.L1.12 -query L1.fasta -out L1.align -evalue 2000 -matrix PAM30 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ken_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ken_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 filtering by sequence identity... filtering by sequence identity... Filter B-factor50, removing:pdb3lh2_chothia.pdb Filter B-factor50, removing:pdb2fx9_chothia.pdb Filter B-factor50, removing:pdb2agj_chothia.pdb Filter B-factor50, removing:pdb1hq4_chothia.pdb Filter B-factor50, removing:pdb1orq_chothia.pdb Filter B-factor50, removing:pdb2a0l_chothia.pdb Filter B-factor50, removing:pdb3hi1_chothia.pdb Filter B-factor50, removing:pdb3sdy_chothia.pdb Filter B-factor50, removing:pdb3eo1_chothia.pdb Filter B-factor50, removing:pdb1ken_chothia.pdb Filter B-factor50, removing:pdb2b4c_chothia.pdb Filter B-factor50, removing:pdb3lh2_chothia.pdb Filter B-factor50, removing:pdb2fx9_chothia.pdb Filter B-factor50, removing:pdb2agj_chothia.pdb Filter B-factor50, removing:pdb1hq4_chothia.pdb filtering by sequence length... filtering by sequence length... L1 template: pdb1ors_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.L2.7 -query L2.fasta -out L2.align -evalue 2000 -matrix PAM30 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1ken_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1baf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2w9e_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2x7l_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1ken_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1baf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2w9e_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2x7l_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 filtering by sequence identity... filtering by sequence identity... Filter B-factor50, removing:pdb1wc7_chothia.pdb Filter B-factor50, removing:pdb3nfs_chothia.pdb Filter B-factor50, removing:pdb4ag4_chothia.pdb Filter B-factor50, removing:pdb1mhp_chothia.pdb Filter B-factor50, removing:pdb1mim_chothia.pdb Filter B-factor50, removing:pdb1egj_chothia.pdb Filter B-factor50, removing:pdb1uz8_chothia.pdb Filter B-factor50, removing:pdb1uz6_chothia.pdb Filter B-factor50, removing:pdb1ub6_chothia.pdb Filter B-factor50, removing:pdb1mjj_chothia.pdb Filter B-factor50, removing:pdb1mie_chothia.pdb Filter B-factor50, removing:pdb1mh5_chothia.pdb Filter B-factor50, removing:pdb2v7h_chothia.pdb Filter B-factor50, removing:pdb1nmc_chothia.pdb Filter B-factor50, removing:pdb3se9_chothia.pdb Filter B-factor50, removing:pdb1hzh_chothia.pdb Filter B-factor50, removing:pdb2a0l_chothia.pdb Filter B-factor50, removing:pdb1wc7_chothia.pdb Filter B-factor50, removing:pdb1orq_chothia.pdb Filter B-factor50, removing:pdb3nfs_chothia.pdb Filter B-factor50, removing:pdb3ab0_chothia.pdb Filter B-factor50, removing:pdb2j5l_chothia.pdb Filter B-factor50, removing:pdb4ag4_chothia.pdb Filter B-factor50, removing:pdb1mhp_chothia.pdb Filter B-factor50, removing:pdb3ncy_chothia.pdb Filter B-factor50, removing:pdb3iu3_chothia.pdb Filter B-factor50, removing:pdb1mim_chothia.pdb Filter B-factor50, removing:pdb2zcl_chothia.pdb Filter B-factor50, removing:pdb2zck_chothia.pdb Filter B-factor50, removing:pdb2x7l_chothia.pdb Filter B-factor50, removing:pdb2fjh_chothia.pdb Filter B-factor50, removing:pdb3opz_chothia.pdb Filter B-factor50, removing:pdb1egj_chothia.pdb Filter B-factor50, removing:pdb3vi4_chothia.pdb Filter B-factor50, removing:pdb3vi3_chothia.pdb Filter B-factor50, removing:pdb1uz8_chothia.pdb Filter B-factor50, removing:pdb1uz6_chothia.pdb Filter B-factor50, removing:pdb1ub6_chothia.pdb Filter B-factor50, removing:pdb1mjj_chothia.pdb Filter B-factor50, removing:pdb1mie_chothia.pdb Filter B-factor50, removing:pdb1mh5_chothia.pdb Filter B-factor50, removing:pdb2v7h_chothia.pdb Filter B-factor50, removing:pdb1nmc_chothia.pdb Filter B-factor50, removing:pdb3se9_chothia.pdb Filter B-factor50, removing:pdb1hzh_chothia.pdb Filter outlier, removing:pdb1bgx_chothia.pdb Filter outlier, removing:pdb1bgx_chothia.pdb filtering by sequence length... filtering by sequence length... L2 template: pdb3oz9_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.L3.9 -query L3.fasta -out L3.align -evalue 2000 -matrix PAM30 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3klh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1t03_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1n6q_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1n5y_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1j5o_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1hys_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3uaj_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb3hfm_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2qad_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2vdn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1u8p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1u8o_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3klh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1t03_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1n6q_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1n5y_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1j5o_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1hys_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3uaj_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb3hfm_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2qad_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2vdn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1u8p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1u8o_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 filtering by sequence identity... filtering by sequence identity... Filter B-factor50, removing:pdb1ngy_chothia.pdb Filter B-factor50, removing:pdb1ngw_chothia.pdb Filter B-factor50, removing:pdb1r0a_chothia.pdb Filter B-factor50, removing:pdb3l7e_chothia.pdb Filter B-factor50, removing:pdb3l5x_chothia.pdb Filter B-factor50, removing:pdb3l5w_chothia.pdb Filter B-factor50, removing:pdb4ag4_chothia.pdb Filter B-factor50, removing:pdb2ak1_chothia.pdb Filter B-factor50, removing:pdb2ajy_chothia.pdb Filter B-factor50, removing:pdb3rvx_chothia.pdb Filter B-factor50, removing:pdb3rvu_chothia.pdb Filter B-factor50, removing:pdb1d5b_chothia.pdb Filter B-factor50, removing:pdb1wc7_chothia.pdb Filter B-factor50, removing:pdb3r06_chothia.pdb Filter B-factor50, removing:pdb3o0r_chothia.pdb Filter B-factor50, removing:pdb3t3m_chothia.pdb Filter B-factor50, removing:pdb2vdo_chothia.pdb Filter B-factor50, removing:pdb3lev_chothia.pdb Filter B-factor50, removing:pdb1yjd_chothia.pdb Filter B-factor50, removing:pdb2xa8_chothia.pdb Filter B-factor50, removing:pdb3ldb_chothia.pdb Filter B-factor50, removing:pdb3ld8_chothia.pdb Filter B-factor50, removing:pdb3efd_chothia.pdb Filter B-factor50, removing:pdb3nab_chothia.pdb Filter B-factor50, removing:pdb3na9_chothia.pdb Filter B-factor50, removing:pdb1orq_chothia.pdb Filter B-factor50, removing:pdb1ngy_chothia.pdb Filter B-factor50, removing:pdb1ngw_chothia.pdb Filter B-factor50, removing:pdb3u4b_chothia.pdb Filter B-factor50, removing:pdb3u46_chothia.pdb Filter B-factor50, removing:pdb3hmx_chothia.pdb Filter B-factor50, removing:pdb3hmw_chothia.pdb Filter B-factor50, removing:pdb3klh_chothia.pdb Filter B-factor50, removing:pdb1t03_chothia.pdb Filter B-factor50, removing:pdb1r0a_chothia.pdb Filter B-factor50, removing:pdb1n6q_chothia.pdb Filter B-factor50, removing:pdb1n5y_chothia.pdb Filter B-factor50, removing:pdb1j5o_chothia.pdb Filter B-factor50, removing:pdb3l7e_chothia.pdb Filter B-factor50, removing:pdb3l5x_chothia.pdb Filter B-factor50, removing:pdb3l5w_chothia.pdb Filter B-factor50, removing:pdb4ag4_chothia.pdb Filter B-factor50, removing:pdb2ak1_chothia.pdb Filter B-factor50, removing:pdb2ajy_chothia.pdb Filter B-factor50, removing:pdb3uaj_chothia.pdb Filter B-factor50, removing:pdb3rvx_chothia.pdb Filter B-factor50, removing:pdb3rvu_chothia.pdb Filter B-factor50, removing:pdb3kj6_chothia.pdb Filter B-factor50, removing:pdb2r4s_chothia.pdb Filter B-factor50, removing:pdb2r4r_chothia.pdb Filter B-factor50, removing:pdb1d5b_chothia.pdb Filter B-factor50, removing:pdb1wc7_chothia.pdb Filter B-factor50, removing:pdb3r06_chothia.pdb Filter B-factor50, removing:pdb3o0r_chothia.pdb Filter B-factor50, removing:pdb2b4c_chothia.pdb Filter B-factor50, removing:pdb2qad_chothia.pdb Filter B-factor50, removing:pdb3ab0_chothia.pdb Filter B-factor50, removing:pdb3t3m_chothia.pdb Filter B-factor50, removing:pdb2vdo_chothia.pdb Filter B-factor50, removing:pdb2vdn_chothia.pdb Filter B-factor50, removing:pdb2vdm_chothia.pdb Filter B-factor50, removing:pdb3tt1_chothia.pdb Filter B-factor50, removing:pdb2zcl_chothia.pdb Filter B-factor50, removing:pdb2zck_chothia.pdb Filter B-factor50, removing:pdb3lev_chothia.pdb Filter B-factor50, removing:pdb1igy_chothia.pdb Filter B-factor50, removing:pdb1fsk_chothia.pdb Filter B-factor50, removing:pdb1yjd_chothia.pdb Filter B-factor50, removing:pdb1ynt_chothia.pdb Filter B-factor50, removing:pdb2xa8_chothia.pdb Filter B-factor50, removing:pdb3ldb_chothia.pdb Filter B-factor50, removing:pdb3ld8_chothia.pdb Filter B-factor50, removing:pdb3efd_chothia.pdb Filter B-factor50, removing:pdb3nab_chothia.pdb Filter B-factor50, removing:pdb3na9_chothia.pdb filtering by sequence length... filtering by sequence length... L3 template: pdb2b2x_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.H1.10 -query H1.fasta -out H1.align -evalue 2000 -matrix PAM30 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2dtg_chothia.pdb resolution:3.8 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2fgw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yuh_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3sm5_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3rif_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ri5_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3rhw_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2op4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2ntf_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1jnh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qad_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb3hpl_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3gb7_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fb8_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3fb7_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fb6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3f7y_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3f7v_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3f5w_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2itc_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hjf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2boc_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2dtg_chothia.pdb resolution:3.8 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2fgw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yuh_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3sm5_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3rif_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ri5_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3rhw_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2op4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2ntf_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1jnh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qad_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb3hpl_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3gb7_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fb8_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3fb7_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fb6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3f7y_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3f7v_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3f5w_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2itc_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hjf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2boc_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 filtering by sequence identity... filtering by sequence identity... Filter B-factor50, removing:pdb1a4k_chothia.pdb Filter B-factor50, removing:pdb1a4j_chothia.pdb Filter B-factor50, removing:pdb1i7z_chothia.pdb Filter B-factor50, removing:pdb3o2w_chothia.pdb Filter B-factor50, removing:pdb1fai_chothia.pdb Filter B-factor50, removing:pdb1mfc_chothia.pdb Filter B-factor50, removing:pdb1fj1_chothia.pdb Filter B-factor50, removing:pdb3bky_chothia.pdb Filter B-factor50, removing:pdb1ymh_chothia.pdb Filter B-factor50, removing:pdb1xf5_chothia.pdb Filter B-factor50, removing:pdb2or9_chothia.pdb Filter B-factor50, removing:pdb3nfs_chothia.pdb Filter B-factor50, removing:pdb1opg_chothia.pdb Filter B-factor50, removing:pdb3mo1_chothia.pdb Filter B-factor50, removing:pdb3mnv_chothia.pdb Filter B-factor50, removing:pdb3cmo_chothia.pdb Filter B-factor50, removing:pdb2y06_chothia.pdb Filter B-factor50, removing:pdb1wt5_chothia.pdb Filter B-factor50, removing:pdb1ocw_chothia.pdb Filter B-factor50, removing:pdb1oaz_chothia.pdb Filter B-factor50, removing:pdb1ngw_chothia.pdb Filter B-factor50, removing:pdb3r06_chothia.pdb Filter B-factor50, removing:pdb3s37_chothia.pdb Filter B-factor50, removing:pdb3nz8_chothia.pdb Filter B-factor50, removing:pdb2aab_chothia.pdb Filter B-factor50, removing:pdb2xqy_chothia.pdb Filter B-factor50, removing:pdb3idx_chothia.pdb Filter B-factor50, removing:pdb2y6s_chothia.pdb Filter B-factor50, removing:pdb1mrf_chothia.pdb Filter B-factor50, removing:pdb1mrd_chothia.pdb Filter B-factor50, removing:pdb1mrc_chothia.pdb Filter B-factor50, removing:pdb3o2d_chothia.pdb Filter B-factor50, removing:pdb1egj_chothia.pdb Filter B-factor50, removing:pdb3sqo_chothia.pdb Filter B-factor50, removing:pdb3o0r_chothia.pdb Filter B-factor50, removing:pdb1hh9_chothia.pdb Filter B-factor50, removing:pdb1cft_chothia.pdb Filter B-factor50, removing:pdb3nh7_chothia.pdb Filter B-factor50, removing:pdb4dkf_chothia.pdb Filter B-factor50, removing:pdb2v7h_chothia.pdb Filter B-factor50, removing:pdb3fo2_chothia.pdb Filter B-factor50, removing:pdb3fo0_chothia.pdb Filter B-factor50, removing:pdb2gjz_chothia.pdb Filter B-factor50, removing:pdb3inu_chothia.pdb Filter B-factor50, removing:pdb3nac_chothia.pdb Filter B-factor50, removing:pdb3nab_chothia.pdb Filter B-factor50, removing:pdb3naa_chothia.pdb Filter B-factor50, removing:pdb2oz4_chothia.pdb Filter B-factor50, removing:pdb1bfo_chothia.pdb Filter B-factor50, removing:pdb1igj_chothia.pdb Filter B-factor50, removing:pdb1igi_chothia.pdb Filter B-factor50, removing:pdb1yjd_chothia.pdb Filter B-factor50, removing:pdb2hkh_chothia.pdb Filter B-factor50, removing:pdb1rih_chothia.pdb Filter B-factor50, removing:pdb1d5i_chothia.pdb Filter B-factor50, removing:pdb2jb5_chothia.pdb Filter B-factor50, removing:pdb1rzg_chothia.pdb Filter B-factor50, removing:pdb3mlw_chothia.pdb Filter B-factor50, removing:pdb3dif_chothia.pdb Filter B-factor50, removing:pdb3bt2_chothia.pdb Filter B-factor50, removing:pdb2fat_chothia.pdb Filter B-factor50, removing:pdb3vg9_chothia.pdb Filter B-factor50, removing:pdb3jwd_chothia.pdb Filter B-factor50, removing:pdb3stz_chothia.pdb Filter B-factor50, removing:pdb3stl_chothia.pdb Filter B-factor50, removing:pdb3or7_chothia.pdb Filter B-factor50, removing:pdb3or6_chothia.pdb Filter B-factor50, removing:pdb3iga_chothia.pdb Filter B-factor50, removing:pdb3fb5_chothia.pdb Filter B-factor50, removing:pdb2w0f_chothia.pdb Filter B-factor50, removing:pdb2nlj_chothia.pdb Filter B-factor50, removing:pdb2jk5_chothia.pdb Filter B-factor50, removing:pdb2itd_chothia.pdb Filter B-factor50, removing:pdb2ih1_chothia.pdb Filter B-factor50, removing:pdb2hvj_chothia.pdb Filter B-factor50, removing:pdb2hg5_chothia.pdb Filter B-factor50, removing:pdb2hfe_chothia.pdb Filter B-factor50, removing:pdb2h8p_chothia.pdb Filter B-factor50, removing:pdb2dwe_chothia.pdb Filter B-factor50, removing:pdb2atk_chothia.pdb Filter B-factor50, removing:pdb1zwi_chothia.pdb Filter B-factor50, removing:pdb1r3l_chothia.pdb Filter B-factor50, removing:pdb1r3k_chothia.pdb Filter B-factor50, removing:pdb1k4d_chothia.pdb Filter B-factor50, removing:pdb3qct_chothia.pdb Filter B-factor50, removing:pdb1d5b_chothia.pdb Filter B-factor50, removing:pdb2eh7_chothia.pdb Filter B-factor50, removing:pdb3o11_chothia.pdb Filter B-factor50, removing:pdb1rhh_chothia.pdb Filter B-factor50, removing:pdb1a4k_chothia.pdb Filter B-factor50, removing:pdb1a4j_chothia.pdb Filter B-factor50, removing:pdb1i7z_chothia.pdb Filter B-factor50, removing:pdb1ynt_chothia.pdb Filter B-factor50, removing:pdb3ubx_chothia.pdb Filter B-factor50, removing:pdb3o2w_chothia.pdb Filter B-factor50, removing:pdb1fai_chothia.pdb Filter B-factor50, removing:pdb3ncy_chothia.pdb Filter B-factor50, removing:pdb1mfc_chothia.pdb Filter B-factor50, removing:pdb1fj1_chothia.pdb Filter B-factor50, removing:pdb2dtg_chothia.pdb Filter B-factor50, removing:pdb3bky_chothia.pdb Filter B-factor50, removing:pdb1ymh_chothia.pdb Filter B-factor50, removing:pdb1xf5_chothia.pdb Filter B-factor50, removing:pdb1xct_chothia.pdb Filter B-factor50, removing:pdb1xcq_chothia.pdb Filter B-factor50, removing:pdb2or9_chothia.pdb Filter B-factor50, removing:pdb3nfs_chothia.pdb Filter B-factor50, removing:pdb3nfp_chothia.pdb Filter B-factor50, removing:pdb1e6j_chothia.pdb Filter B-factor50, removing:pdb2adj_chothia.pdb Filter B-factor50, removing:pdb1opg_chothia.pdb Filter B-factor50, removing:pdb3mo1_chothia.pdb Filter B-factor50, removing:pdb3mnv_chothia.pdb Filter B-factor50, removing:pdb3v4v_chothia.pdb Filter B-factor50, removing:pdb3v4p_chothia.pdb Filter B-factor50, removing:pdb3cmo_chothia.pdb Filter B-factor50, removing:pdb2y06_chothia.pdb Filter B-factor50, removing:pdb1wt5_chothia.pdb Filter B-factor50, removing:pdb1ocw_chothia.pdb Filter B-factor50, removing:pdb1oaz_chothia.pdb Filter B-factor50, removing:pdb1ngw_chothia.pdb Filter B-factor50, removing:pdb3r06_chothia.pdb Filter B-factor50, removing:pdb3s37_chothia.pdb Filter B-factor50, removing:pdb3s36_chothia.pdb Filter B-factor50, removing:pdb3sm5_chothia.pdb Filter B-factor50, removing:pdb3nz8_chothia.pdb Filter B-factor50, removing:pdb2aab_chothia.pdb Filter B-factor50, removing:pdb2xqy_chothia.pdb Filter B-factor50, removing:pdb3idy_chothia.pdb Filter B-factor50, removing:pdb3idx_chothia.pdb Filter B-factor50, removing:pdb3sdy_chothia.pdb Filter B-factor50, removing:pdb2y6s_chothia.pdb Filter B-factor50, removing:pdb1mrf_chothia.pdb Filter B-factor50, removing:pdb1mrd_chothia.pdb Filter B-factor50, removing:pdb1mrc_chothia.pdb Filter B-factor50, removing:pdb3rif_chothia.pdb Filter B-factor50, removing:pdb3ri5_chothia.pdb Filter B-factor50, removing:pdb3rhw_chothia.pdb Filter B-factor50, removing:pdb3o2d_chothia.pdb Filter B-factor50, removing:pdb1egj_chothia.pdb Filter B-factor50, removing:pdb1fsk_chothia.pdb Filter B-factor50, removing:pdb3sqo_chothia.pdb Filter B-factor50, removing:pdb3o0r_chothia.pdb Filter B-factor50, removing:pdb1hh9_chothia.pdb Filter B-factor50, removing:pdb1cft_chothia.pdb Filter B-factor50, removing:pdb3nh7_chothia.pdb Filter B-factor50, removing:pdb1bbj_chothia.pdb Filter B-factor50, removing:pdb3tt1_chothia.pdb Filter B-factor50, removing:pdb1ae6_chothia.pdb Filter B-factor50, removing:pdb4dkf_chothia.pdb Filter B-factor50, removing:pdb3iu3_chothia.pdb Filter B-factor50, removing:pdb2v7h_chothia.pdb Filter B-factor50, removing:pdb1igy_chothia.pdb Filter B-factor50, removing:pdb3fo2_chothia.pdb Filter B-factor50, removing:pdb3fo0_chothia.pdb Filter B-factor50, removing:pdb2gjz_chothia.pdb Filter B-factor50, removing:pdb3c09_chothia.pdb Filter B-factor50, removing:pdb3inu_chothia.pdb Filter B-factor50, removing:pdb3csy_chothia.pdb Filter B-factor50, removing:pdb3nac_chothia.pdb Filter B-factor50, removing:pdb3nab_chothia.pdb Filter B-factor50, removing:pdb3naa_chothia.pdb Filter B-factor50, removing:pdb3v7a_chothia.pdb Filter B-factor50, removing:pdb2oz4_chothia.pdb Filter B-factor50, removing:pdb1bfo_chothia.pdb Filter B-factor50, removing:pdb1bey_chothia.pdb Filter B-factor50, removing:pdb2op4_chothia.pdb Filter B-factor50, removing:pdb2ntf_chothia.pdb Filter B-factor50, removing:pdb1jnh_chothia.pdb Filter B-factor50, removing:pdb1igj_chothia.pdb Filter B-factor50, removing:pdb1igi_chothia.pdb Filter B-factor50, removing:pdb1yjd_chothia.pdb Filter B-factor50, removing:pdb2zcl_chothia.pdb Filter B-factor50, removing:pdb2zck_chothia.pdb Filter B-factor50, removing:pdb2hkh_chothia.pdb Filter B-factor50, removing:pdb3kj6_chothia.pdb Filter B-factor50, removing:pdb2r4s_chothia.pdb Filter B-factor50, removing:pdb2r4r_chothia.pdb Filter B-factor50, removing:pdb1rih_chothia.pdb Filter B-factor50, removing:pdb1yed_chothia.pdb Filter B-factor50, removing:pdb3fmg_chothia.pdb Filter B-factor50, removing:pdb1d5i_chothia.pdb Filter B-factor50, removing:pdb2qad_chothia.pdb Filter B-factor50, removing:pdb2jb5_chothia.pdb Filter B-factor50, removing:pdb1rzg_chothia.pdb Filter B-factor50, removing:pdb3mlw_chothia.pdb Filter B-factor50, removing:pdb3dif_chothia.pdb Filter B-factor50, removing:pdb3bt2_chothia.pdb Filter B-factor50, removing:pdb2fat_chothia.pdb Filter B-factor50, removing:pdb3vga_chothia.pdb Filter B-factor50, removing:pdb3vg9_chothia.pdb Filter B-factor50, removing:pdb3hmx_chothia.pdb Filter B-factor50, removing:pdb3hmw_chothia.pdb Filter B-factor50, removing:pdb3jwd_chothia.pdb Filter B-factor50, removing:pdb3stz_chothia.pdb Filter B-factor50, removing:pdb3stl_chothia.pdb Filter B-factor50, removing:pdb3or7_chothia.pdb Filter B-factor50, removing:pdb3or6_chothia.pdb Filter B-factor50, removing:pdb3iga_chothia.pdb Filter B-factor50, removing:pdb3hpl_chothia.pdb Filter B-factor50, removing:pdb3gb7_chothia.pdb Filter B-factor50, removing:pdb3fb8_chothia.pdb Filter B-factor50, removing:pdb3fb7_chothia.pdb Filter B-factor50, removing:pdb3fb6_chothia.pdb Filter B-factor50, removing:pdb3fb5_chothia.pdb Filter B-factor50, removing:pdb3f7y_chothia.pdb Filter B-factor50, removing:pdb3f7v_chothia.pdb Filter B-factor50, removing:pdb3f5w_chothia.pdb Filter B-factor50, removing:pdb2w0f_chothia.pdb Filter B-factor50, removing:pdb2nlj_chothia.pdb Filter B-factor50, removing:pdb2jk5_chothia.pdb Filter B-factor50, removing:pdb2itd_chothia.pdb Filter B-factor50, removing:pdb2itc_chothia.pdb Filter B-factor50, removing:pdb2ih1_chothia.pdb Filter B-factor50, removing:pdb2hvj_chothia.pdb Filter B-factor50, removing:pdb2hjf_chothia.pdb Filter B-factor50, removing:pdb2hg5_chothia.pdb Filter B-factor50, removing:pdb2hfe_chothia.pdb Filter B-factor50, removing:pdb2h8p_chothia.pdb Filter B-factor50, removing:pdb2dwe_chothia.pdb Filter B-factor50, removing:pdb2atk_chothia.pdb Filter B-factor50, removing:pdb1zwi_chothia.pdb Filter B-factor50, removing:pdb1r3l_chothia.pdb Filter B-factor50, removing:pdb1r3k_chothia.pdb Filter B-factor50, removing:pdb1k4d_chothia.pdb Filter B-factor50, removing:pdb3qct_chothia.pdb Filter B-factor50, removing:pdb1d5b_chothia.pdb Filter B-factor50, removing:pdb2eh7_chothia.pdb Filter B-factor50, removing:pdb3ck0_chothia.pdb Filter B-factor50, removing:pdb3opz_chothia.pdb Filter B-factor50, removing:pdb3eo1_chothia.pdb Filter B-factor50, removing:pdb1b4j_chothia.pdb Filter B-factor50, removing:pdb1b2w_chothia.pdb Filter B-factor50, removing:pdb3o11_chothia.pdb Filter B-factor50, removing:pdb2b4c_chothia.pdb Filter B-factor50, removing:pdb1rhh_chothia.pdb Filter outlier, removing:pdb1ngx_chothia.pdb Filter outlier, removing:pdb1t66_chothia.pdb Filter outlier, removing:pdb1mh5_chothia.pdb Filter outlier, removing:pdb1a4k_chothia.pdb Filter outlier, removing:pdb1a4j_chothia.pdb Filter outlier, removing:pdb1ocw_chothia.pdb Filter outlier, removing:pdb1ngx_chothia.pdb Filter outlier, removing:pdb1t66_chothia.pdb Filter outlier, removing:pdb1igi_chothia.pdb Filter outlier, removing:pdb1mh5_chothia.pdb Filter outlier, removing:pdb1b2w_chothia.pdb filtering by sequence length... filtering by sequence length... H1 template: pdb4d9q_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.H2.17 -query H2.fasta -out H2.align -evalue 2000 -matrix PAM30 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3sm5_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3rif_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ri5_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3rhw_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1cu4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2dtg_chothia.pdb resolution:3.8 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1adq_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1zmy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3sm5_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3rif_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ri5_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3rhw_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1cu4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2dtg_chothia.pdb resolution:3.8 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1adq_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1zmy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 filtering by sequence identity... filtering by sequence identity... Filter B-factor50, removing:pdb1i7z_chothia.pdb Filter B-factor50, removing:pdb1cz8_chothia.pdb Filter B-factor50, removing:pdb4d9r_chothia.pdb Filter B-factor50, removing:pdb4d9q_chothia.pdb Filter B-factor50, removing:pdb3mnw_chothia.pdb Filter B-factor50, removing:pdb3mnv_chothia.pdb Filter B-factor50, removing:pdb1fj1_chothia.pdb Filter B-factor50, removing:pdb1ymh_chothia.pdb Filter B-factor50, removing:pdb1xf5_chothia.pdb Filter B-factor50, removing:pdb1n64_chothia.pdb Filter B-factor50, removing:pdb1mhh_chothia.pdb Filter B-factor50, removing:pdb3o2w_chothia.pdb Filter B-factor50, removing:pdb3o2v_chothia.pdb Filter B-factor50, removing:pdb2o5z_chothia.pdb Filter B-factor50, removing:pdb2o5x_chothia.pdb Filter B-factor50, removing:pdb1c1e_chothia.pdb Filter B-factor50, removing:pdb3t2n_chothia.pdb Filter B-factor50, removing:pdb2oz4_chothia.pdb Filter B-factor50, removing:pdb3dgg_chothia.pdb Filter B-factor50, removing:pdb1ad9_chothia.pdb Filter B-factor50, removing:pdb3kym_chothia.pdb Filter B-factor50, removing:pdb1i8m_chothia.pdb Filter B-factor50, removing:pdb3vg9_chothia.pdb Filter B-factor50, removing:pdb3r1g_chothia.pdb Filter B-factor50, removing:pdb3o2d_chothia.pdb Filter B-factor50, removing:pdb3nfs_chothia.pdb Filter B-factor50, removing:pdb3nz8_chothia.pdb Filter B-factor50, removing:pdb2z4q_chothia.pdb Filter B-factor50, removing:pdb1wt5_chothia.pdb Filter B-factor50, removing:pdb1fai_chothia.pdb Filter B-factor50, removing:pdb1egj_chothia.pdb Filter B-factor50, removing:pdb3bt2_chothia.pdb Filter B-factor50, removing:pdb2fat_chothia.pdb Filter B-factor50, removing:pdb3qct_chothia.pdb Filter B-factor50, removing:pdb2qsc_chothia.pdb Filter B-factor50, removing:pdb3ubx_chothia.pdb Filter B-factor50, removing:pdb1i7z_chothia.pdb Filter B-factor50, removing:pdb1cz8_chothia.pdb Filter B-factor50, removing:pdb4d9r_chothia.pdb Filter B-factor50, removing:pdb4d9q_chothia.pdb Filter B-factor50, removing:pdb3mnw_chothia.pdb Filter B-factor50, removing:pdb3mnv_chothia.pdb Filter B-factor50, removing:pdb1fj1_chothia.pdb Filter B-factor50, removing:pdb1ymh_chothia.pdb Filter B-factor50, removing:pdb1xf5_chothia.pdb Filter B-factor50, removing:pdb1xct_chothia.pdb Filter B-factor50, removing:pdb1xcq_chothia.pdb Filter B-factor50, removing:pdb1n64_chothia.pdb Filter B-factor50, removing:pdb1mhh_chothia.pdb Filter B-factor50, removing:pdb3o2w_chothia.pdb Filter B-factor50, removing:pdb3o2v_chothia.pdb Filter B-factor50, removing:pdb2o5z_chothia.pdb Filter B-factor50, removing:pdb2o5x_chothia.pdb Filter B-factor50, removing:pdb1c1e_chothia.pdb Filter B-factor50, removing:pdb3t2n_chothia.pdb Filter B-factor50, removing:pdb1ynt_chothia.pdb Filter B-factor50, removing:pdb3sdy_chothia.pdb Filter B-factor50, removing:pdb3sm5_chothia.pdb Filter B-factor50, removing:pdb1b4j_chothia.pdb Filter B-factor50, removing:pdb1b2w_chothia.pdb Filter B-factor50, removing:pdb3rif_chothia.pdb Filter B-factor50, removing:pdb3ri5_chothia.pdb Filter B-factor50, removing:pdb3rhw_chothia.pdb Filter B-factor50, removing:pdb2oz4_chothia.pdb Filter B-factor50, removing:pdb3dgg_chothia.pdb Filter B-factor50, removing:pdb1ae6_chothia.pdb Filter B-factor50, removing:pdb1ad9_chothia.pdb Filter B-factor50, removing:pdb3kym_chothia.pdb Filter B-factor50, removing:pdb1i8m_chothia.pdb Filter B-factor50, removing:pdb3vga_chothia.pdb Filter B-factor50, removing:pdb3vg9_chothia.pdb Filter B-factor50, removing:pdb3r1g_chothia.pdb Filter B-factor50, removing:pdb1e6j_chothia.pdb Filter B-factor50, removing:pdb3o2d_chothia.pdb Filter B-factor50, removing:pdb2hh0_chothia.pdb Filter B-factor50, removing:pdb3nfs_chothia.pdb Filter B-factor50, removing:pdb3nfp_chothia.pdb Filter B-factor50, removing:pdb3nz8_chothia.pdb Filter B-factor50, removing:pdb2z4q_chothia.pdb Filter B-factor50, removing:pdb1wt5_chothia.pdb Filter B-factor50, removing:pdb2vwe_chothia.pdb Filter B-factor50, removing:pdb3ncy_chothia.pdb Filter B-factor50, removing:pdb2dtg_chothia.pdb Filter B-factor50, removing:pdb1fai_chothia.pdb Filter B-factor50, removing:pdb1egj_chothia.pdb Filter B-factor50, removing:pdb1yed_chothia.pdb Filter B-factor50, removing:pdb3v7a_chothia.pdb Filter B-factor50, removing:pdb2a6k_chothia.pdb Filter B-factor50, removing:pdb2a6d_chothia.pdb Filter B-factor50, removing:pdb1adq_chothia.pdb Filter B-factor50, removing:pdb3bt2_chothia.pdb Filter B-factor50, removing:pdb2fat_chothia.pdb Filter B-factor50, removing:pdb3qct_chothia.pdb Filter B-factor50, removing:pdb1igy_chothia.pdb Filter B-factor50, removing:pdb3eo1_chothia.pdb Filter B-factor50, removing:pdb2qsc_chothia.pdb Filter outlier, removing:pdb1b2w_chothia.pdb filtering by sequence length... filtering by sequence length... H2 template: pdb1a4j_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.H3.14 -query H3.fasta -out H3.align -evalue 2000 -matrix PAM30 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter template_resolution, removing:pdb2vit_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vis_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vir_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vit_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vis_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vir_chothia.pdb resolution:3.2 filtering by sequence identity... filtering by sequence identity... Filter B-factor50, removing:pdb1dqd_chothia.pdb Filter B-factor50, removing:pdb3cfk_chothia.pdb Filter B-factor50, removing:pdb3cfj_chothia.pdb Filter B-factor50, removing:pdb1y0l_chothia.pdb Filter B-factor50, removing:pdb2a1w_chothia.pdb Filter B-factor50, removing:pdb1cz8_chothia.pdb Filter B-factor50, removing:pdb1dqd_chothia.pdb Filter B-factor50, removing:pdb3cfk_chothia.pdb Filter B-factor50, removing:pdb3cfj_chothia.pdb Filter B-factor50, removing:pdb1y0l_chothia.pdb Filter B-factor50, removing:pdb2a1w_chothia.pdb Filter B-factor50, removing:pdb1cz8_chothia.pdb filtering by sequence length... filtering by sequence length... H3 template: pdb2qhr_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.light_heavy -query light_heavy.fasta -out light_heavy.align -evalue 1e-05 -matrix BLOSUM62 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2w9e_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3i50_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2dtg_chothia.pdb resolution:3.8 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ken_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hpl_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3gb7_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fb8_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3fb7_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fb6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3f7y_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3f7v_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3f5w_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2itc_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hjf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2boc_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1baf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3cfe_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1acy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3sm5_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1bvl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ob1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1fig_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1rvf_chothia.pdb resolution:4.0 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2w9e_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3iu3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3bgf_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3i50_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2dtg_chothia.pdb resolution:3.8 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ken_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hpl_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3gb7_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fb8_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3fb7_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fb6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3f7y_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3f7v_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3f5w_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2itc_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hjf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2boc_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1baf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3cfe_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1acy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3sm5_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1bvl_chothia.pdb resolution:2.9 filtering by sequence identity... filtering by sequence identity... filtering by sequence length... filtering by sequence length... light_heavy template: pdb1uwx_chothia.pdb Running ProFit... Running antibody_graft 0 cd "grafting/details" && "/home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/main/source/bin/antibody_graft.linuxgccrelease" -database /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/main/database -overwrite -s FR.pdb -antibody::h3_no_stem_graft -scorefile score-graft.sf core.init: Rosetta version exported from http://www.rosettacommons.org core.init: command: /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/main/source/bin/antibody_graft.linuxgccrelease -database /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/main/database -overwrite -s FR.pdb -antibody::h3_no_stem_graft -scorefile score-graft.sf core.init: 'RNG device' seed mode, using '/dev/urandom', seed=-912880793 seed_offset=0 real_seed=-912880793 core.init.random: RandomGenerator:init: Normal mode, seed=-912880793 RG_type=mt19937 protocols.antibody.GraftCDRLoopsProtocol: Setting default settings protocols.antibody.GraftCDRLoopsProtocol: Reading Options core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2013 core.scoring.etable: Starting energy table calculation core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6) core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6) core.scoring.etable: Finished calculating energy tables. basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBPoly1D.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBFadeIntervals.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBEval.csv basic.io.database: Database file opened: scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4 basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_pp protocols.antibody: //////////////////////////////////////////////////////////////////////////////// protocols.antibody: /// Rosetta 3 Antibody Modeler /// protocols.antibody: /// CDR Assembling /// protocols.antibody: /// /// protocols.antibody: /// Graft_l1: 1 protocols.antibody: /// Graft_l2: 1 protocols.antibody: /// Graft_l3: 1 protocols.antibody: /// Graft_h1: 1 protocols.antibody: /// Graft_h2: 1 protocols.antibody: /// Graft_h3: 1 protocols.antibody: /// camelid: 0 protocols.antibody: //////////////////////////////////////////////////////////////////////////////// protocols.antibody: protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs protocols.jd2.PDBJobInputter: pushed FR.pdb nstruct index 1 protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from PDB FR.pdb core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set. Created 722 residue types core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue GLU:NtermProteinFull 1 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue GLU:NtermProteinFull 1 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue GLU:NtermProteinFull 1 core.conformation.Conformation: [ WARNING ] missing heavyatom: OE1 on residue GLU:NtermProteinFull 1 core.conformation.Conformation: [ WARNING ] missing heavyatom: OE2 on residue GLU:NtermProteinFull 1 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ASN 2 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ASN 2 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD1 on residue ASN 2 core.conformation.Conformation: [ WARNING ] missing heavyatom: ND2 on residue ASN 2 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue LEU 4 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LEU 4 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue LEU 4 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue LEU 4 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ARG 24 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ARG 24 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue ARG 24 core.conformation.Conformation: [ WARNING ] missing heavyatom: NE on residue ARG 24 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue ARG 24 core.conformation.Conformation: [ WARNING ] missing heavyatom: NH1 on residue ARG 24 core.conformation.Conformation: [ WARNING ] missing heavyatom: NH2 on residue ARG 24 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue VAL 29 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG1 on residue VAL 29 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG2 on residue VAL 29 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue SER 31 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG on residue SER 31 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue SER 32 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG on residue SER 32 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue LEU 34 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LEU 34 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue LEU 34 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue LEU 34 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue HIS 35 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue HIS 35 core.conformation.Conformation: [ WARNING ] missing heavyatom: ND1 on residue HIS 35 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue HIS 35 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue HIS 35 core.conformation.Conformation: [ WARNING ] missing heavyatom: NE2 on residue HIS 35 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue HIS 35 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue SER 41 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG on residue SER 41 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ALA 43 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue LEU 47 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LEU 47 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue LEU 47 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue LEU 47 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue SER 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG on residue SER 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ASN 54 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ASN 54 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD1 on residue ASN 54 core.conformation.Conformation: [ WARNING ] missing heavyatom: ND2 on residue ASN 54 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue VAL 79 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG1 on residue VAL 79 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG2 on residue VAL 79 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue GLN 90 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue GLN 90 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue GLN 90 core.conformation.Conformation: [ WARNING ] missing heavyatom: OE1 on residue GLN 90 core.conformation.Conformation: [ WARNING ] missing heavyatom: NE2 on residue GLN 90 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue TYR 92 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue TYR 92 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue TYR 92 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue TYR 92 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue TYR 92 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue TYR 92 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue TYR 92 core.conformation.Conformation: [ WARNING ] missing heavyatom: OH on residue TYR 92 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue PRO 96 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue PRO 96 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue PRO 96 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue TYR 97 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue TYR 97 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue TYR 97 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue TYR 97 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue TYR 97 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue TYR 97 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue TYR 97 core.conformation.Conformation: [ WARNING ] missing heavyatom: OH on residue TYR 97 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue ALA:CtermProteinFull 110 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ALA:CtermProteinFull 110 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ALA:NtermProteinFull 111 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue VAL 112 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG1 on residue VAL 112 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG2 on residue VAL 112 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue GLU 115 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue GLU 115 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue GLU 115 core.conformation.Conformation: [ WARNING ] missing heavyatom: OE1 on residue GLU 115 core.conformation.Conformation: [ WARNING ] missing heavyatom: OE2 on residue GLU 115 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue THR 140 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG1 on residue THR 140 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG2 on residue THR 140 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ILE 161 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG1 on residue ILE 161 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG2 on residue ILE 161 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 161 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue TYR 164 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue TYR 164 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue TYR 164 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue TYR 164 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue TYR 164 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue TYR 164 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue TYR 164 core.conformation.Conformation: [ WARNING ] missing heavyatom: OH on residue TYR 164 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue PRO 168 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue PRO 168 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue PRO 168 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ALA 171 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ASP 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ASP 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD1 on residue ASP 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD2 on residue ASP 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ASP 173 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ASP 173 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD1 on residue ASP 173 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD2 on residue ASP 173 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue LYS 175 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 175 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 175 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 175 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 175 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue GLU 176 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue GLU 176 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue GLU 176 core.conformation.Conformation: [ WARNING ] missing heavyatom: OE1 on residue GLU 176 core.conformation.Conformation: [ WARNING ] missing heavyatom: OE2 on residue GLU 176 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ALA 186 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ALA 188 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue TYR 210 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue TYR 210 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue TYR 210 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue TYR 210 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue TYR 210 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue TYR 210 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue TYR 210 core.conformation.Conformation: [ WARNING ] missing heavyatom: OH on residue TYR 210 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue TYR 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue TYR 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue TYR 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue TYR 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue TYR 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue TYR 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue TYR 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: OH on residue TYR 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue SER 213 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG on residue SER 213 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue THR 214 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG1 on residue THR 214 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG2 on residue THR 214 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue TYR 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue TYR 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue TYR 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue TYR 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue TYR 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue TYR 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue TYR 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: OH on residue TYR 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue PRO 216 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue PRO 216 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue PRO 216 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue TYR 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue TYR 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue TYR 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue TYR 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue TYR 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue TYR 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue TYR 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: OH on residue TYR 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue TYR 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue TYR 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue TYR 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue TYR 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue TYR 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue TYR 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue TYR 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: OH on residue TYR 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ALA 219 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue MET 220 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue MET 220 core.conformation.Conformation: [ WARNING ] missing heavyatom: SD on residue MET 220 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue MET 220 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue SER:CtermProteinFull 232 core.conformation.Conformation: Found disulfide between residues 23 89 core.conformation.Conformation: current variant for 23 CYS core.conformation.Conformation: current variant for 89 CYS core.conformation.Conformation: current variant for 23 CYD core.conformation.Conformation: current variant for 89 CYD core.conformation.Conformation: Found disulfide between residues 132 206 core.conformation.Conformation: current variant for 132 CYS core.conformation.Conformation: current variant for 206 CYS core.conformation.Conformation: current variant for 132 CYD core.conformation.Conformation: current variant for 206 CYD core.pack.task: Packer task: initialize from command line() core.pack.pack_missing_sidechains: packing residue number 1 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 2 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 4 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 24 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 29 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 31 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 32 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 34 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 35 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 41 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 43 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 47 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 51 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 54 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 79 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 90 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 92 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 96 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 97 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 110 because of missing atom number 6 atom name CB core.pack.pack_missing_sidechains: packing residue number 111 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 112 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 115 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 140 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 161 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 164 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 168 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 171 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 172 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 173 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 175 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 176 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 186 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 188 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 210 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 211 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 213 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 214 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 215 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 216 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 217 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 218 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 219 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 220 because of missing atom number 5 atom name CB core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2013 core.pack.dunbrack: Dunbrack 2010 library took 0.043118 seconds to load from binary core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 521 rotamers at 44 positions. core.pack.pack_rotamers: IG: 78240 bytes protocols.antibody.GraftCDRLoopsProtocol: in the apply function protocols.antibody.GraftCDRLoopsProtocol: AAAAAAAA cst_weight: 0 protocols.antibody.GraftCDRLoopsProtocol: Danger Will Robinson! Native is an impostor! protocols.antibody.GraftCDRLoopsProtocol: 'native_pose' is just a copy of the 'input_pose' protocols.antibody.GraftCDRLoopsProtocol: since you didn't sepcifiy the native pdb name basic.io.database: Database file opened: sampling/antibodies/cluster_center_dihedrals.txt protocols.antibody.AntibodyNumberingParser: Antibody numbering scheme definitions read successfully protocols.antibody.AntibodyNumberingParser: Antibody CDR definition read successfully antibody.AntibodyInfo: Successfully finished the CDR definition antibody.AntibodyInfo: AC Detecting Regular CDR H3 Stem Type antibody.AntibodyInfo: ARDYYGSTYPYYAMDYW antibody.AntibodyInfo: AC Finished Detecting Regular CDR H3 Stem Type: KINKED antibody.AntibodyInfo: AC Finished Detecting Regular CDR H3 Stem Type: Kink: 1 Extended: 0 protocols.loops.util: checking peptide bond geometry: protocols.loops.util: checking peptide bond geometry: protocols.loops.util: checking peptide bond geometry: protocols.loops.util: 100 H C-N 517.305 max: 2 protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job FR_0001H3peptide bond geometry issues at loop position 100 H Please check pdb for large chainbreaks or missing density. Loop modeling applications can be used to close loops or create residues in the loop from missing density. You can OVERRIDE this check by passing the flag -check_cdr_chainbreaks false protocols.jd2.JobDistributor: protocols.jd2.JobDistributor: FR_0001 reported that its input was bad and will not retry protocols.jd2.FileSystemJobDistributor: job failed, reporting bad input; other jobs of same input will be canceled: FR_0001 protocols.jd2.JobDistributor: no more batches to process... protocols.jd2.JobDistributor: 1 jobs considered, 1 jobs attempted in 0 seconds