Rosetta Antibody script [Python, version 2.0]. Starting... Output prefix: grafting/ Blast database: /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database Antibody database: /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/antibody_database rosetta_bin: /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/main/source/bin [platform: linuxgccrelease] rosetta_database: /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/main/database Using full antibody database (no homolog exclusion) Idealize: False Relax: True Light chain: DVLMTQSPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHVPLTFGAGTKSELKR Heavy chain: EVQLVESGGGLVKPGGSLKLSCAASGFTFSDHYMYWVRQTPEKRLEWVAMISDGGTYTFYPDSVKGRFIISRDNAKNNLYLQMGSLRSEDTAIYYCTRDRDFSWFAYWGQGTLVTVS L1 detected: RSSQSIVHSNGNTYLE ( 16 residues ) L3 detected: FQGSHVPLT ( 9 residues ) L2 detected: KVSNRFS ( 7 residues ) FR_L1: DVLMTQSPLSLPVSLGDQASISC FR_L2: WYLQKPGQSPKLLIY FR_L3: GVPDRFSGSGSGTDFTLKISRVEAEDLGIYYC FR_L4: FGAGTKSELKR L segments: DVLMTQSPLSLPVSLGDQASISC RSSQSIVHSNGNTYLE WYLQKPGQSPKLLIY KVSNRFS GVPDRFSGSGSGTDFTLKISRVEAEDLGIYYC FQGSHVPLT FGAGTKSELKR H1 detected: GFTFSDHYMY ( 10 residues ) H3 detected: DRDFSWFAY ( 9 residues ) H2 detected: MISDGGTYTFYPDSVKG ( 17 residues ) FR_H1: EVQLVESGGGLVKPGGSLKLSCAAS FR_H2: WVRQTPEKRLEWVA FR_H3: RFIISRDNAKNNLYLQMGSLRSEDTAIYYCTR FR_H4: WGQGTLVTVS H segments: EVQLVESGGGLVKPGGSLKLSCAAS GFTFSDHYMY WVRQTPEKRLEWVA MISDGGTYTFYPDSVKG RFIISRDNAKNNLYLQMGSLRSEDTAIYYCTR DRDFSWFAY WGQGTLVTVS CDR: { "FRH": "GLVKPGGSLKLSCAASWVRQEWVARFIISRDNAKNNLYLQMGSLRSEDTAIYYCTRWGQGTLV", "FRL": "SLPVSLGDQASISCWYLQKLLIYGVPDRFSGSGFTLKISRVEAEDLGIYYCFGAGTKS", "FR_H1": "EVQLVESGGGLVKPGGSLKLSCAAS", "FR_H2": "WVRQTPEKRLEWVA", "FR_H3": "RFIISRDNAKNNLYLQMGSLRSEDTAIYYCTR", "FR_H4": "WGQGTLVTVS", "FR_L1": "DVLMTQSPLSLPVSLGDQASISC", "FR_L2": "WYLQKPGQSPKLLIY", "FR_L3": "GVPDRFSGSGSGTDFTLKISRVEAEDLGIYYC", "FR_L4": "FGAGTKSELKR", "H1": "GFTFSDHYMY", "H2": "MISDGGTYTFYPDSVKG", "H3": "DRDFSWFAY", "L1": "RSSQSIVHSNGNTYLE", "L2": "KVSNRFS", "L3": "FQGSHVPLT", "heavy": "EVQLVESGGGLVKPGGSLKLSCAASGFTFSDHYMYWVRQTPEKRLEWVAMISDGGTYTFYPDSVKGRFIISRDNAKNNLYLQMGSLRSEDTAIYYCTRDRDFSWFAYWGQG", "light": "DVLMTQSPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHVPLTFGAG", "light_heavy": "DVLMTQSPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHVPLTFGAGEVQLVESGGGLVKPGGSLKLSCAASGFTFSDHYMYWVRQTPEKRLEWVAMISDGGTYTFYPDSVKGRFIISRDNAKNNLYLQMGSLRSEDTAIYYCTRDRDFSWFAYWGQG", "numbering_H": { "1": "E", "10": "G", "100": "W", "100A": "F", "101": "A", "102": "Y", "103": "W", "104": "G", "105": "Q", "106": "G", "107": "T", "108": "L", "109": "V", "11": "L", "110": "T", "111": "V", "112": "S", "12": "V", "13": "K", "14": "P", "15": "G", "16": "G", "17": "S", "18": "L", "19": "K", "2": "V", "20": "L", "21": "S", "22": "C", "23": "A", "24": "A", "25": "S", "26": "G", "27": "F", "28": "T", "29": "F", "3": "Q", "30": "S", "31": "D", "32": "H", "33": "Y", "34": "M", "35": "Y", "36": "W", "37": "V", "38": "R", "39": "Q", "4": "L", "40": "T", "41": "P", "42": "E", "43": "K", "44": "R", "45": "L", "46": "E", "47": "W", "48": "V", "49": "A", "5": "V", "50": "M", "51": "I", "52": "S", "52A": "D", "53": "G", "54": "G", "55": "T", "56": "Y", "57": "T", "58": "F", "59": "Y", "6": "E", "60": "P", "61": "D", "62": "S", "63": "V", "64": "K", "65": "G", "66": "R", "67": "F", "68": "I", "69": "I", "7": "S", "70": "S", "71": "R", "72": "D", "73": "N", "74": "A", "75": "K", "76": "N", "77": "N", "78": "L", "79": "Y", "8": "G", "80": "L", "81": "Q", "82": "M", "82A": "G", "82B": "S", "82C": "L", "83": "R", "84": "S", "85": "E", "86": "D", "87": "T", "88": "A", "89": "I", "9": "G", "90": "Y", "91": "Y", "92": "C", "93": "T", "94": "R", "95": "D", "96": "R", "97": "D", "98": "F", "99": "S" }, "numbering_L": { "1": "D", "10": "S", "100": "A", "101": "G", "102": "T", "103": "K", "104": "S", "105": "E", "106": "L", "107": "K", "108": "R", "11": "L", "12": "P", "13": "V", "14": "S", "15": "L", "16": "G", "17": "D", "18": "Q", "19": "A", "2": "V", "20": "S", "21": "I", "22": "S", "23": "C", "24": "R", "25": "S", "26": "S", "27": "Q", "28": "S", "29": "I", "3": "L", "30": "V", "30A": "H", "30B": "S", "30C": "N", "30D": "G", "30E": "N", "31": "T", "32": "Y", "33": "L", "34": "E", "35": "W", "36": "Y", "37": "L", "38": "Q", "39": "K", "4": "M", "40": "P", "41": "G", "42": "Q", "43": "S", "44": "P", "45": "K", "46": "L", "47": "L", "48": "I", "49": "Y", "5": "T", "50": "K", "51": "V", "52": "S", "53": "N", "54": "R", "55": "F", "56": "S", "57": "G", "58": "V", "59": "P", "6": "Q", "60": "D", "61": "R", "62": "F", "63": "S", "64": "G", "65": "S", "66": "G", "67": "S", "68": "G", "69": "T", "7": "S", "70": "D", "71": "F", "72": "T", "73": "L", "74": "K", "75": "I", "76": "S", "77": "R", "78": "V", "79": "E", "8": "P", "80": "A", "81": "E", "82": "D", "83": "L", "84": "G", "85": "I", "86": "Y", "87": "Y", "88": "C", "89": "F", "9": "L", "90": "Q", "91": "G", "92": "S", "93": "H", "94": "V", "95": "P", "96": "L", "97": "T", "98": "F", "99": "G" } } Running blastp cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.FRL -query FRL.fasta -out FRL.align -evalue 1e-05 -matrix BLOSUM62 -word_size 2 -outfmt 7 -max_target_seqs 600 filtering by sequence length... filtering by sequence length... Filter outlier, removing:pdb1rmf_chothia.pdb Filter outlier, removing:pdb1ngx_chothia.pdb Filter outlier, removing:pdb1b2w_chothia.pdb Filter outlier, removing:pdb1pg7_chothia.pdb Filter outlier, removing:pdb1rmf_chothia.pdb Filter outlier, removing:pdb1ngx_chothia.pdb Filter outlier, removing:pdb1b2w_chothia.pdb Filter outlier, removing:pdb1pg7_chothia.pdb Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ifp_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nld_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cu4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3kj4_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1kcr_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1acy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1kyo_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb3klh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1t03_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1n6q_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1n5y_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2arj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1nsn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3uaj_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1u8p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1u8o_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1j5o_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1hys_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2jix_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1bvl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2qad_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ifp_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nld_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cu4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3kj4_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1kcr_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1acy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1kyo_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb3klh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1t03_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1n6q_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1n5y_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vga_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2arj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ubx_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1nsn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3uaj_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1u8p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1u8o_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1j5o_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1hys_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v7a_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2jix_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1bvl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2qad_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 filtering by sequence identity... filtering by sequence identity... FRL template: pdb2ipu_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.FRH -query FRH.fasta -out FRH.align -evalue 1e-05 -matrix BLOSUM62 -word_size 2 -outfmt 7 -max_target_seqs 600 filtering by sequence length... filtering by sequence length... Filter outlier, removing:pdb1pg7_chothia.pdb Filter outlier, removing:pdb1b2w_chothia.pdb Filter outlier, removing:pdb1ngx_chothia.pdb Filter outlier, removing:pdb1ocw_chothia.pdb Filter outlier, removing:pdb1pg7_chothia.pdb Filter outlier, removing:pdb1b2w_chothia.pdb Filter outlier, removing:pdb1ngx_chothia.pdb Filter outlier, removing:pdb1ocw_chothia.pdb Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1adq_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3piq_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb4dag_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2fl5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1zlw_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1op5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3i50_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3kj4_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2vdn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2arj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1kcr_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3cfe_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb1nsn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2op4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2ntf_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vit_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vis_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vir_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3lqa_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1jnn_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnl_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2ig2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3p30_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1baf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1kyo_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yuh_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1adq_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3piq_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb4dag_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2fl5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1zlw_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1op5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3i50_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3kj4_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2vdn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2arj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1kcr_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3cfe_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb1nsn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2op4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2ntf_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vit_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vis_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vir_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3lqa_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1jnn_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnl_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2ig2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3p30_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1baf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1kyo_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yuh_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 filtering by sequence identity... filtering by sequence identity... FRH template: pdb2j4w_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.light -query light.fasta -out light.align -evalue 1e-05 -matrix BLOSUM62 -word_size 2 -outfmt 7 -max_target_seqs 600 filtering by sequence length... filtering by sequence length... Filter template_resolution, removing:pdb3ifp_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1nld_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cu4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3kj4_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1acy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1nsn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1kcr_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3uaj_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2qad_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2arj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1kyo_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2jix_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hfm_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ifp_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1nld_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cu4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3kj4_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1acy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1nsn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1kcr_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3sdy_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3uaj_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2qad_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2arj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1kyo_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2jix_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1rzk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1g9n_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3hmx_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hmw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hfm_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3kj6_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4s_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2r4r_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2vwe_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 filtering by sequence identity... filtering by sequence identity... light template: pdb2ipu_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.heavy -query heavy.fasta -out heavy.align -evalue 1e-05 -matrix BLOSUM62 -word_size 2 -outfmt 7 -max_target_seqs 600 filtering by sequence length... filtering by sequence length... Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1adq_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3piq_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb4dag_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2fl5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3i50_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1zlw_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1op5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2ig2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2vdn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3kj4_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2op4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2ntf_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnn_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnl_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3mj9_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3mj8_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3rif_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ri5_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3rhw_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1kcr_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yuh_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1cu4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hpl_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3gb7_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fb8_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3fb7_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fb6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3f7y_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3f7v_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3f5w_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2itc_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hjf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2boc_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1jnh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vit_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vis_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vir_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1adq_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3piq_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb4dag_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2fl5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3i50_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejz_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ejy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r9h_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2htl_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2htk_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ht4_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2ht3_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ht2_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2hlf_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2h2s_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2h2p_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2fee_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fed_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ez0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb2exy_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2exw_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1otu_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1ott_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1zlw_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1op5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2ig2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2vdn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3kj4_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2op4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2ntf_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3cvh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1z3g_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnn_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnl_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2a0l_chothia.pdb resolution:3.9 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2hh0_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1orq_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3mj9_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3mj8_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ncy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fbi_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3rif_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ri5_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3rhw_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1kcr_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yuh_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1cu4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1e6j_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3hpl_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3gb7_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fb8_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3fb7_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb3fb6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3f7y_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3f7v_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3f5w_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2itc_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2hjf_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2boc_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1jnh_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vit_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vis_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2vir_chothia.pdb resolution:3.2 filtering by sequence identity... filtering by sequence identity... heavy template: pdb2otu_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.L1.16 -query L1.fasta -out L1.align -evalue 2000 -matrix PAM30 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter B-factor50, removing:pdb3nn8_chothia.pdb Filter B-factor50, removing:pdb3fo0_chothia.pdb Filter B-factor50, removing:pdb2gk0_chothia.pdb Filter B-factor50, removing:pdb2gjz_chothia.pdb Filter B-factor50, removing:pdb1fl6_chothia.pdb Filter B-factor50, removing:pdb1fl5_chothia.pdb Filter B-factor50, removing:pdb3ifp_chothia.pdb Filter B-factor50, removing:pdb3fo2_chothia.pdb Filter B-factor50, removing:pdb1i9j_chothia.pdb Filter B-factor50, removing:pdb1i9i_chothia.pdb Filter B-factor50, removing:pdb2g60_chothia.pdb Filter B-factor50, removing:pdb1bln_chothia.pdb Filter B-factor50, removing:pdb3mck_chothia.pdb Filter B-factor50, removing:pdb1ucb_chothia.pdb Filter B-factor50, removing:pdb1cly_chothia.pdb Filter B-factor50, removing:pdb3nz8_chothia.pdb Filter B-factor50, removing:pdb3o2w_chothia.pdb Filter B-factor50, removing:pdb3o2v_chothia.pdb Filter B-factor50, removing:pdb2o5z_chothia.pdb Filter B-factor50, removing:pdb2o5x_chothia.pdb Filter B-factor50, removing:pdb2h1p_chothia.pdb Filter B-factor50, removing:pdb1kfa_chothia.pdb Filter B-factor50, removing:pdb1a4j_chothia.pdb Filter B-factor50, removing:pdb1f3d_chothia.pdb Filter B-factor50, removing:pdb1wt5_chothia.pdb Filter B-factor50, removing:pdb1qfu_chothia.pdb Filter B-factor50, removing:pdb2d03_chothia.pdb Filter B-factor50, removing:pdb3hr5_chothia.pdb Filter B-factor50, removing:pdb1mie_chothia.pdb Filter B-factor50, removing:pdb3qg7_chothia.pdb Filter B-factor50, removing:pdb3qg6_chothia.pdb Filter B-factor50, removing:pdb1mh5_chothia.pdb Filter B-factor50, removing:pdb1igf_chothia.pdb Filter B-factor50, removing:pdb1nak_chothia.pdb Filter B-factor50, removing:pdb3vi4_chothia.pdb Filter B-factor50, removing:pdb3vi3_chothia.pdb Filter B-factor50, removing:pdb1ae6_chothia.pdb Filter B-factor50, removing:pdb3pp3_chothia.pdb Filter B-factor50, removing:pdb2eh7_chothia.pdb Filter B-factor50, removing:pdb3v4v_chothia.pdb Filter B-factor50, removing:pdb3v4p_chothia.pdb Filter B-factor50, removing:pdb1fl3_chothia.pdb Filter B-factor50, removing:pdb1uz8_chothia.pdb Filter B-factor50, removing:pdb1uz6_chothia.pdb Filter B-factor50, removing:pdb1nd0_chothia.pdb Filter B-factor50, removing:pdb2ak1_chothia.pdb Filter B-factor50, removing:pdb2ajy_chothia.pdb Filter B-factor50, removing:pdb3qnx_chothia.pdb Filter B-factor50, removing:pdb2imn_chothia.pdb Filter B-factor50, removing:pdb1vpo_chothia.pdb Filter B-factor50, removing:pdb1l7t_chothia.pdb Filter B-factor50, removing:pdb3nn8_chothia.pdb Filter B-factor50, removing:pdb3fo0_chothia.pdb Filter B-factor50, removing:pdb2gk0_chothia.pdb Filter B-factor50, removing:pdb2gjz_chothia.pdb Filter B-factor50, removing:pdb1fl6_chothia.pdb Filter B-factor50, removing:pdb1fl5_chothia.pdb Filter B-factor50, removing:pdb3ifp_chothia.pdb Filter B-factor50, removing:pdb3fo2_chothia.pdb Filter B-factor50, removing:pdb1i9j_chothia.pdb Filter B-factor50, removing:pdb1i9i_chothia.pdb Filter B-factor50, removing:pdb2g60_chothia.pdb Filter B-factor50, removing:pdb1bln_chothia.pdb Filter B-factor50, removing:pdb3mck_chothia.pdb Filter B-factor50, removing:pdb1ucb_chothia.pdb Filter B-factor50, removing:pdb1cly_chothia.pdb Filter B-factor50, removing:pdb3nz8_chothia.pdb Filter B-factor50, removing:pdb3o2w_chothia.pdb Filter B-factor50, removing:pdb3o2v_chothia.pdb Filter B-factor50, removing:pdb2o5z_chothia.pdb Filter B-factor50, removing:pdb2o5x_chothia.pdb Filter B-factor50, removing:pdb2h1p_chothia.pdb Filter B-factor50, removing:pdb1kfa_chothia.pdb Filter B-factor50, removing:pdb1a4j_chothia.pdb Filter B-factor50, removing:pdb1f3d_chothia.pdb Filter B-factor50, removing:pdb1wt5_chothia.pdb Filter B-factor50, removing:pdb1qfu_chothia.pdb Filter B-factor50, removing:pdb2d03_chothia.pdb Filter B-factor50, removing:pdb3hr5_chothia.pdb Filter B-factor50, removing:pdb1mie_chothia.pdb Filter B-factor50, removing:pdb3qg7_chothia.pdb Filter B-factor50, removing:pdb3qg6_chothia.pdb Filter B-factor50, removing:pdb1mh5_chothia.pdb Filter B-factor50, removing:pdb1igf_chothia.pdb Filter B-factor50, removing:pdb1nak_chothia.pdb Filter B-factor50, removing:pdb3vi4_chothia.pdb Filter B-factor50, removing:pdb3vi3_chothia.pdb Filter B-factor50, removing:pdb1ae6_chothia.pdb Filter B-factor50, removing:pdb3pp3_chothia.pdb Filter B-factor50, removing:pdb2eh7_chothia.pdb Filter B-factor50, removing:pdb3v4v_chothia.pdb Filter B-factor50, removing:pdb3v4p_chothia.pdb Filter B-factor50, removing:pdb1fl3_chothia.pdb Filter B-factor50, removing:pdb1uz8_chothia.pdb Filter B-factor50, removing:pdb1uz6_chothia.pdb Filter B-factor50, removing:pdb1nd0_chothia.pdb Filter B-factor50, removing:pdb2ak1_chothia.pdb Filter B-factor50, removing:pdb2ajy_chothia.pdb Filter B-factor50, removing:pdb3qnx_chothia.pdb Filter B-factor50, removing:pdb2imn_chothia.pdb Filter B-factor50, removing:pdb1vpo_chothia.pdb Filter B-factor50, removing:pdb1l7t_chothia.pdb filtering by sequence length... filtering by sequence length... Filter outlier, removing:pdb1nbv_chothia.pdb Filter outlier, removing:pdb1cbv_chothia.pdb Filter outlier, removing:pdb1mj8_chothia.pdb Filter outlier, removing:pdb1fl5_chothia.pdb Filter outlier, removing:pdb1ucb_chothia.pdb Filter outlier, removing:pdb1nbv_chothia.pdb Filter outlier, removing:pdb1cbv_chothia.pdb Filter outlier, removing:pdb1mj8_chothia.pdb Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1nld_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cu4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ifp_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1nld_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cu4_chothia.pdb resolution:2.9 filtering by sequence identity... filtering by sequence identity... L1 template: pdb2ipu_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.L2.7 -query L2.fasta -out L2.align -evalue 2000 -matrix PAM30 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter B-factor50, removing:pdb3o2w_chothia.pdb Filter B-factor50, removing:pdb3o2v_chothia.pdb Filter B-factor50, removing:pdb3nz8_chothia.pdb Filter B-factor50, removing:pdb3nn8_chothia.pdb Filter B-factor50, removing:pdb3mck_chothia.pdb Filter B-factor50, removing:pdb3fo2_chothia.pdb Filter B-factor50, removing:pdb3fo0_chothia.pdb Filter B-factor50, removing:pdb2gk0_chothia.pdb Filter B-factor50, removing:pdb2gjz_chothia.pdb Filter B-factor50, removing:pdb2d03_chothia.pdb Filter B-factor50, removing:pdb1t66_chothia.pdb Filter B-factor50, removing:pdb1qfu_chothia.pdb Filter B-factor50, removing:pdb1i9i_chothia.pdb Filter B-factor50, removing:pdb1fl6_chothia.pdb Filter B-factor50, removing:pdb1wt5_chothia.pdb Filter B-factor50, removing:pdb1kfa_chothia.pdb Filter B-factor50, removing:pdb3v4v_chothia.pdb Filter B-factor50, removing:pdb3v4p_chothia.pdb Filter B-factor50, removing:pdb1hzh_chothia.pdb Filter B-factor50, removing:pdb3o2w_chothia.pdb Filter B-factor50, removing:pdb3o2v_chothia.pdb Filter B-factor50, removing:pdb3nz8_chothia.pdb Filter B-factor50, removing:pdb3nn8_chothia.pdb Filter B-factor50, removing:pdb3mck_chothia.pdb Filter B-factor50, removing:pdb3fo2_chothia.pdb Filter B-factor50, removing:pdb3fo0_chothia.pdb Filter B-factor50, removing:pdb2gk0_chothia.pdb Filter B-factor50, removing:pdb2gjz_chothia.pdb Filter B-factor50, removing:pdb2d03_chothia.pdb Filter B-factor50, removing:pdb1t66_chothia.pdb Filter B-factor50, removing:pdb1qfu_chothia.pdb Filter B-factor50, removing:pdb1i9i_chothia.pdb Filter B-factor50, removing:pdb1fl6_chothia.pdb Filter B-factor50, removing:pdb1wt5_chothia.pdb Filter B-factor50, removing:pdb1kfa_chothia.pdb Filter B-factor50, removing:pdb3v4v_chothia.pdb Filter B-factor50, removing:pdb3v4p_chothia.pdb Filter B-factor50, removing:pdb1hzh_chothia.pdb filtering by sequence length... filtering by sequence length... Filter outlier, removing:pdb2dlf_chothia.pdb Filter outlier, removing:pdb1dlf_chothia.pdb Filter outlier, removing:pdb2dlf_chothia.pdb Filter outlier, removing:pdb1dlf_chothia.pdb Filter template_resolution, removing:pdb3ifp_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ifp_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 filtering by sequence identity... filtering by sequence identity... L2 template: pdb2ipu_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.L3.9 -query L3.fasta -out L3.align -evalue 2000 -matrix PAM30 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter B-factor50, removing:pdb3mck_chothia.pdb Filter B-factor50, removing:pdb3nz8_chothia.pdb Filter B-factor50, removing:pdb1fl6_chothia.pdb Filter B-factor50, removing:pdb1fl5_chothia.pdb Filter B-factor50, removing:pdb1i9i_chothia.pdb Filter B-factor50, removing:pdb3fo2_chothia.pdb Filter B-factor50, removing:pdb3fo0_chothia.pdb Filter B-factor50, removing:pdb2gjz_chothia.pdb Filter B-factor50, removing:pdb3nn8_chothia.pdb Filter B-factor50, removing:pdb3mck_chothia.pdb Filter B-factor50, removing:pdb3nz8_chothia.pdb Filter B-factor50, removing:pdb1fl6_chothia.pdb Filter B-factor50, removing:pdb1fl5_chothia.pdb Filter B-factor50, removing:pdb1i9i_chothia.pdb Filter B-factor50, removing:pdb3fo2_chothia.pdb Filter B-factor50, removing:pdb3fo0_chothia.pdb Filter B-factor50, removing:pdb2gjz_chothia.pdb Filter B-factor50, removing:pdb3nn8_chothia.pdb filtering by sequence length... filtering by sequence length... Filter outlier, removing:pdb1ucb_chothia.pdb Filter outlier, removing:pdb1ucb_chothia.pdb Filter template_resolution, removing:pdb3ifp_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb3ifp_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 filtering by sequence identity... filtering by sequence identity... L3 template: pdb2ipu_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.H1.10 -query H1.fasta -out H1.align -evalue 2000 -matrix PAM30 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter B-factor50, removing:pdb2j5l_chothia.pdb Filter B-factor50, removing:pdb3jwd_chothia.pdb Filter B-factor50, removing:pdb3i50_chothia.pdb Filter B-factor50, removing:pdb3oko_chothia.pdb Filter B-factor50, removing:pdb3okn_chothia.pdb Filter B-factor50, removing:pdb3oke_chothia.pdb Filter B-factor50, removing:pdb1wc7_chothia.pdb Filter B-factor50, removing:pdb1q9l_chothia.pdb Filter B-factor50, removing:pdb1q9k_chothia.pdb Filter B-factor50, removing:pdb1bfo_chothia.pdb Filter B-factor50, removing:pdb1bey_chothia.pdb Filter B-factor50, removing:pdb3phq_chothia.pdb Filter B-factor50, removing:pdb1egj_chothia.pdb Filter B-factor50, removing:pdb3mlw_chothia.pdb Filter B-factor50, removing:pdb1fj1_chothia.pdb Filter B-factor50, removing:pdb2fl5_chothia.pdb Filter B-factor50, removing:pdb1bbj_chothia.pdb Filter B-factor50, removing:pdb3sqo_chothia.pdb Filter B-factor50, removing:pdb1jnn_chothia.pdb Filter B-factor50, removing:pdb1jnl_chothia.pdb Filter B-factor50, removing:pdb4dag_chothia.pdb Filter B-factor50, removing:pdb1adq_chothia.pdb Filter B-factor50, removing:pdb1k6q_chothia.pdb Filter B-factor50, removing:pdb3ehb_chothia.pdb Filter B-factor50, removing:pdb1h0d_chothia.pdb Filter B-factor50, removing:pdb1ar1_chothia.pdb Filter B-factor50, removing:pdb3ab0_chothia.pdb Filter B-factor50, removing:pdb2qqn_chothia.pdb Filter B-factor50, removing:pdb3s37_chothia.pdb Filter B-factor50, removing:pdb3s36_chothia.pdb Filter B-factor50, removing:pdb1hkl_chothia.pdb Filter B-factor50, removing:pdb1gaf_chothia.pdb Filter B-factor50, removing:pdb1aj7_chothia.pdb Filter B-factor50, removing:pdb3eyo_chothia.pdb Filter B-factor50, removing:pdb3eyf_chothia.pdb Filter B-factor50, removing:pdb3nh7_chothia.pdb Filter B-factor50, removing:pdb3ztn_chothia.pdb Filter B-factor50, removing:pdb3idy_chothia.pdb Filter B-factor50, removing:pdb3idx_chothia.pdb Filter B-factor50, removing:pdb1uz8_chothia.pdb Filter B-factor50, removing:pdb1uz6_chothia.pdb Filter B-factor50, removing:pdb3pnw_chothia.pdb Filter B-factor50, removing:pdb4dke_chothia.pdb Filter B-factor50, removing:pdb3ck0_chothia.pdb Filter B-factor50, removing:pdb3r06_chothia.pdb Filter B-factor50, removing:pdb3cfi_chothia.pdb Filter B-factor50, removing:pdb2adj_chothia.pdb Filter B-factor50, removing:pdb1opg_chothia.pdb Filter B-factor50, removing:pdb2or9_chothia.pdb Filter B-factor50, removing:pdb2aab_chothia.pdb Filter B-factor50, removing:pdb2qsc_chothia.pdb Filter B-factor50, removing:pdb1t4k_chothia.pdb Filter B-factor50, removing:pdb2qr0_chothia.pdb Filter B-factor50, removing:pdb2j5l_chothia.pdb Filter B-factor50, removing:pdb3jwd_chothia.pdb Filter B-factor50, removing:pdb3i50_chothia.pdb Filter B-factor50, removing:pdb3oko_chothia.pdb Filter B-factor50, removing:pdb3okn_chothia.pdb Filter B-factor50, removing:pdb3oke_chothia.pdb Filter B-factor50, removing:pdb1wc7_chothia.pdb Filter B-factor50, removing:pdb1q9l_chothia.pdb Filter B-factor50, removing:pdb1q9k_chothia.pdb Filter B-factor50, removing:pdb1bfo_chothia.pdb Filter B-factor50, removing:pdb1bey_chothia.pdb Filter B-factor50, removing:pdb3phq_chothia.pdb Filter B-factor50, removing:pdb1egj_chothia.pdb Filter B-factor50, removing:pdb3mlw_chothia.pdb Filter B-factor50, removing:pdb1fj1_chothia.pdb Filter B-factor50, removing:pdb2fl5_chothia.pdb Filter B-factor50, removing:pdb1bbj_chothia.pdb Filter B-factor50, removing:pdb3sqo_chothia.pdb Filter B-factor50, removing:pdb1jnn_chothia.pdb Filter B-factor50, removing:pdb1jnl_chothia.pdb Filter B-factor50, removing:pdb4dag_chothia.pdb Filter B-factor50, removing:pdb1adq_chothia.pdb Filter B-factor50, removing:pdb1k6q_chothia.pdb Filter B-factor50, removing:pdb3ehb_chothia.pdb Filter B-factor50, removing:pdb1h0d_chothia.pdb Filter B-factor50, removing:pdb1ar1_chothia.pdb Filter B-factor50, removing:pdb3ab0_chothia.pdb Filter B-factor50, removing:pdb2qqn_chothia.pdb Filter B-factor50, removing:pdb3s37_chothia.pdb Filter B-factor50, removing:pdb3s36_chothia.pdb Filter B-factor50, removing:pdb1hkl_chothia.pdb Filter B-factor50, removing:pdb1gaf_chothia.pdb Filter B-factor50, removing:pdb1aj7_chothia.pdb Filter B-factor50, removing:pdb3eyo_chothia.pdb Filter B-factor50, removing:pdb3eyf_chothia.pdb Filter B-factor50, removing:pdb3nh7_chothia.pdb Filter B-factor50, removing:pdb3ztn_chothia.pdb Filter B-factor50, removing:pdb3idy_chothia.pdb Filter B-factor50, removing:pdb3idx_chothia.pdb Filter B-factor50, removing:pdb1uz8_chothia.pdb Filter B-factor50, removing:pdb1uz6_chothia.pdb Filter B-factor50, removing:pdb3pnw_chothia.pdb Filter B-factor50, removing:pdb4dke_chothia.pdb Filter B-factor50, removing:pdb3ck0_chothia.pdb Filter B-factor50, removing:pdb3r06_chothia.pdb Filter B-factor50, removing:pdb3cfi_chothia.pdb Filter B-factor50, removing:pdb2adj_chothia.pdb Filter B-factor50, removing:pdb1opg_chothia.pdb Filter B-factor50, removing:pdb2or9_chothia.pdb Filter B-factor50, removing:pdb2aab_chothia.pdb Filter B-factor50, removing:pdb2qsc_chothia.pdb Filter B-factor50, removing:pdb1t4k_chothia.pdb Filter B-factor50, removing:pdb2qr0_chothia.pdb filtering by sequence length... filtering by sequence length... Filter outlier, removing:pdb1t66_chothia.pdb Filter outlier, removing:pdb1t66_chothia.pdb Filter outlier, removing:pdb1hkl_chothia.pdb Filter outlier, removing:pdb1gaf_chothia.pdb Filter outlier, removing:pdb1aj7_chothia.pdb Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2ig2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3i50_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2fl5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1jnn_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1jnl_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2ig2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb4dag_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1adq_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 filtering by sequence identity... filtering by sequence identity... H1 template: pdb1s3k_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.H2.17 -query H2.fasta -out H2.align -evalue 2000 -matrix PAM30 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter B-factor50, removing:pdb1opg_chothia.pdb Filter B-factor50, removing:pdb2adj_chothia.pdb Filter B-factor50, removing:pdb2adi_chothia.pdb Filter B-factor50, removing:pdb2j5l_chothia.pdb Filter B-factor50, removing:pdb2or9_chothia.pdb Filter B-factor50, removing:pdb3hb3_chothia.pdb Filter B-factor50, removing:pdb3ehb_chothia.pdb Filter B-factor50, removing:pdb1ar1_chothia.pdb Filter B-factor50, removing:pdb3s88_chothia.pdb Filter B-factor50, removing:pdb1f4w_chothia.pdb Filter B-factor50, removing:pdb1ucb_chothia.pdb Filter B-factor50, removing:pdb3ztn_chothia.pdb Filter B-factor50, removing:pdb3q6f_chothia.pdb Filter B-factor50, removing:pdb3piq_chothia.pdb Filter B-factor50, removing:pdb2r8s_chothia.pdb Filter B-factor50, removing:pdb2v7n_chothia.pdb Filter B-factor50, removing:pdb2fl5_chothia.pdb Filter B-factor50, removing:pdb3dwt_chothia.pdb Filter B-factor50, removing:pdb3n85_chothia.pdb Filter B-factor50, removing:pdb1nl0_chothia.pdb Filter B-factor50, removing:pdb1kno_chothia.pdb Filter B-factor50, removing:pdb3eyo_chothia.pdb Filter B-factor50, removing:pdb3eyf_chothia.pdb Filter B-factor50, removing:pdb3oau_chothia.pdb Filter B-factor50, removing:pdb2oqj_chothia.pdb Filter B-factor50, removing:pdb1zlw_chothia.pdb Filter B-factor50, removing:pdb1zlv_chothia.pdb Filter B-factor50, removing:pdb1zlu_chothia.pdb Filter B-factor50, removing:pdb1zls_chothia.pdb Filter B-factor50, removing:pdb2qsc_chothia.pdb Filter B-factor50, removing:pdb3idy_chothia.pdb Filter B-factor50, removing:pdb3idx_chothia.pdb Filter B-factor50, removing:pdb3be1_chothia.pdb Filter B-factor50, removing:pdb3nh7_chothia.pdb Filter B-factor50, removing:pdb3k2u_chothia.pdb Filter B-factor50, removing:pdb3efd_chothia.pdb Filter B-factor50, removing:pdb2wub_chothia.pdb Filter B-factor50, removing:pdb3ivk_chothia.pdb Filter B-factor50, removing:pdb2qr0_chothia.pdb Filter B-factor50, removing:pdb1ohq_chothia.pdb Filter B-factor50, removing:pdb3skj_chothia.pdb Filter B-factor50, removing:pdb2aab_chothia.pdb Filter B-factor50, removing:pdb3r1g_chothia.pdb Filter B-factor50, removing:pdb1igc_chothia.pdb Filter B-factor50, removing:pdb2fjh_chothia.pdb Filter B-factor50, removing:pdb3inu_chothia.pdb Filter B-factor50, removing:pdb3csy_chothia.pdb Filter B-factor50, removing:pdb3mug_chothia.pdb Filter B-factor50, removing:pdb3qct_chothia.pdb Filter B-factor50, removing:pdb3kym_chothia.pdb Filter B-factor50, removing:pdb2qqk_chothia.pdb Filter B-factor50, removing:pdb1tzi_chothia.pdb Filter B-factor50, removing:pdb1adq_chothia.pdb Filter B-factor50, removing:pdb2hfg_chothia.pdb Filter B-factor50, removing:pdb4dkf_chothia.pdb Filter B-factor50, removing:pdb3u4b_chothia.pdb Filter B-factor50, removing:pdb3u46_chothia.pdb Filter B-factor50, removing:pdb3tcl_chothia.pdb Filter B-factor50, removing:pdb3ntc_chothia.pdb Filter B-factor50, removing:pdb2a6k_chothia.pdb Filter B-factor50, removing:pdb2a6d_chothia.pdb Filter B-factor50, removing:pdb3opz_chothia.pdb Filter B-factor50, removing:pdb3s37_chothia.pdb Filter B-factor50, removing:pdb3s36_chothia.pdb Filter B-factor50, removing:pdb1mrf_chothia.pdb Filter B-factor50, removing:pdb1mrd_chothia.pdb Filter B-factor50, removing:pdb1mh5_chothia.pdb Filter B-factor50, removing:pdb1yed_chothia.pdb Filter B-factor50, removing:pdb1bbj_chothia.pdb Filter B-factor50, removing:pdb4dke_chothia.pdb Filter B-factor50, removing:pdb1a0q_chothia.pdb Filter B-factor50, removing:pdb1ynt_chothia.pdb Filter B-factor50, removing:pdb1opg_chothia.pdb Filter B-factor50, removing:pdb2adj_chothia.pdb Filter B-factor50, removing:pdb2adi_chothia.pdb Filter B-factor50, removing:pdb2j5l_chothia.pdb Filter B-factor50, removing:pdb2or9_chothia.pdb Filter B-factor50, removing:pdb3hb3_chothia.pdb Filter B-factor50, removing:pdb3ehb_chothia.pdb Filter B-factor50, removing:pdb1ar1_chothia.pdb Filter B-factor50, removing:pdb3s88_chothia.pdb Filter B-factor50, removing:pdb1f4w_chothia.pdb Filter B-factor50, removing:pdb1ucb_chothia.pdb Filter B-factor50, removing:pdb3ztn_chothia.pdb Filter B-factor50, removing:pdb3q6f_chothia.pdb Filter B-factor50, removing:pdb3piq_chothia.pdb Filter B-factor50, removing:pdb2r8s_chothia.pdb Filter B-factor50, removing:pdb2v7n_chothia.pdb Filter B-factor50, removing:pdb2fl5_chothia.pdb Filter B-factor50, removing:pdb3dwt_chothia.pdb Filter B-factor50, removing:pdb3n85_chothia.pdb Filter B-factor50, removing:pdb1nl0_chothia.pdb Filter B-factor50, removing:pdb1kno_chothia.pdb Filter B-factor50, removing:pdb3eyo_chothia.pdb Filter B-factor50, removing:pdb3eyf_chothia.pdb Filter B-factor50, removing:pdb3oau_chothia.pdb Filter B-factor50, removing:pdb2oqj_chothia.pdb Filter B-factor50, removing:pdb1zlw_chothia.pdb Filter B-factor50, removing:pdb1zlv_chothia.pdb Filter B-factor50, removing:pdb1zlu_chothia.pdb Filter B-factor50, removing:pdb1zls_chothia.pdb Filter B-factor50, removing:pdb2qsc_chothia.pdb Filter B-factor50, removing:pdb3idy_chothia.pdb Filter B-factor50, removing:pdb3idx_chothia.pdb Filter B-factor50, removing:pdb3be1_chothia.pdb Filter B-factor50, removing:pdb3nh7_chothia.pdb Filter B-factor50, removing:pdb3k2u_chothia.pdb Filter B-factor50, removing:pdb3efd_chothia.pdb Filter B-factor50, removing:pdb2wub_chothia.pdb Filter B-factor50, removing:pdb3ivk_chothia.pdb Filter B-factor50, removing:pdb2qr0_chothia.pdb Filter B-factor50, removing:pdb1ohq_chothia.pdb Filter B-factor50, removing:pdb3skj_chothia.pdb Filter B-factor50, removing:pdb2aab_chothia.pdb Filter B-factor50, removing:pdb3r1g_chothia.pdb Filter B-factor50, removing:pdb1igc_chothia.pdb Filter B-factor50, removing:pdb2fjh_chothia.pdb Filter B-factor50, removing:pdb3inu_chothia.pdb Filter B-factor50, removing:pdb3csy_chothia.pdb Filter B-factor50, removing:pdb3mug_chothia.pdb Filter B-factor50, removing:pdb3qct_chothia.pdb Filter B-factor50, removing:pdb3kym_chothia.pdb Filter B-factor50, removing:pdb2qqk_chothia.pdb Filter B-factor50, removing:pdb1tzi_chothia.pdb Filter B-factor50, removing:pdb1adq_chothia.pdb Filter B-factor50, removing:pdb2hfg_chothia.pdb Filter B-factor50, removing:pdb4dkf_chothia.pdb Filter B-factor50, removing:pdb3u4b_chothia.pdb Filter B-factor50, removing:pdb3u46_chothia.pdb Filter B-factor50, removing:pdb3tcl_chothia.pdb Filter B-factor50, removing:pdb3ntc_chothia.pdb Filter B-factor50, removing:pdb2a6k_chothia.pdb Filter B-factor50, removing:pdb2a6d_chothia.pdb Filter B-factor50, removing:pdb3opz_chothia.pdb Filter B-factor50, removing:pdb3s37_chothia.pdb Filter B-factor50, removing:pdb3s36_chothia.pdb Filter B-factor50, removing:pdb1mrf_chothia.pdb Filter B-factor50, removing:pdb1mrd_chothia.pdb Filter B-factor50, removing:pdb1mh5_chothia.pdb Filter B-factor50, removing:pdb1yed_chothia.pdb Filter B-factor50, removing:pdb1bbj_chothia.pdb Filter B-factor50, removing:pdb4dke_chothia.pdb Filter B-factor50, removing:pdb1a0q_chothia.pdb Filter B-factor50, removing:pdb1ynt_chothia.pdb filtering by sequence length... filtering by sequence length... Filter outlier, removing:pdb1rmf_chothia.pdb Filter outlier, removing:pdb1rmf_chothia.pdb Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2ig2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1zmy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1op5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3q6f_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3piq_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2ig2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1zmy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2fl5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3dwt_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1zlw_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1op5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1adq_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3opz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 filtering by sequence identity... filtering by sequence identity... H2 template: pdb1qkz_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.H3.9 -query H3.fasta -out H3.align -evalue 2000 -matrix PAM30 -word_size 2 -outfmt 7 -max_target_seqs 600 Filter B-factor50, removing:pdb2gsg_chothia.pdb Filter B-factor50, removing:pdb1fsk_chothia.pdb Filter B-factor50, removing:pdb2gsg_chothia.pdb Filter B-factor50, removing:pdb1fsk_chothia.pdb filtering by sequence length... filtering by sequence length... Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 filtering by sequence identity... filtering by sequence identity... H3 template: pdb2otu_chothia.pdb cd grafting/details && blastp -db /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/tools/antibody/blast_database/database.light_heavy -query light_heavy.fasta -out light_heavy.align -evalue 1e-05 -matrix BLOSUM62 -word_size 2 -outfmt 7 -max_target_seqs 600 filtering by sequence length... filtering by sequence length... Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ifp_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1cu4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1nld_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3kj4_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1zlw_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1op5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1adq_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3piq_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kcr_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dag_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1acy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1nsn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2arj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2uud_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2cjv_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1hin_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1him_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1cl7_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ifp_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztn_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ztj_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2o5y_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3nn8_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2dbl_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1dbk_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ve0_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3s88_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3csy_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb2mcp_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2j5l_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3kyk_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2adj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1qle_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3v4v_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3v4p_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fpt_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3ck0_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1r24_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2wub_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3idy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1ae6_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3s36_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2fjh_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3be1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1yed_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2gfb_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kno_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3vi4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3vi3_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3ivk_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1cu4_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3n85_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2qql_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1s78_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dke_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2aeq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1nld_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2r29_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3qa3_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2qr0_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1v7n_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1b2w_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1za3_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb3kj4_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3ab0_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1f11_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1pkq_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2i9l_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3u4b_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3u46_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1xct_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1xcq_chothia.pdb resolution:3.5 Filter template_resolution, removing:pdb1i9r_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1zlw_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1op5_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb3g6d_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3tt1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3nfp_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2a9n_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2zcl_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb2zck_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3eo1_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1adq_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3c09_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb1fsk_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1bey_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb3piq_chothia.pdb resolution:3.3 Filter template_resolution, removing:pdb1afv_chothia.pdb resolution:3.7 Filter template_resolution, removing:pdb3bsz_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1ahw_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1t04_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1kcr_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1igy_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb4dag_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1acy_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1ynt_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb1b4j_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb3fmg_chothia.pdb resolution:3.4 Filter template_resolution, removing:pdb1nsn_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb32c2_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb1bbj_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb2vdm_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2vc2_chothia.pdb resolution:3.1 Filter template_resolution, removing:pdb3hi1_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1qnz_chothia.pdb resolution:5.0 Filter template_resolution, removing:pdb2zjs_chothia.pdb resolution:3.2 Filter template_resolution, removing:pdb2a6k_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2a6d_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1aif_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1ncd_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb2arj_chothia.pdb resolution:2.9 Filter template_resolution, removing:pdb1nma_chothia.pdb resolution:3.0 Filter template_resolution, removing:pdb2b4c_chothia.pdb resolution:3.3 filtering by sequence identity... filtering by sequence identity... light_heavy template: pdb1ucb_chothia.pdb Running ProFit... Running antibody_graft 0 cd "grafting/details" && "/home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/main/source/bin/antibody_graft.linuxgccrelease" -database /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/main/database -overwrite -s FR.pdb -antibody::h3_no_stem_graft -scorefile score-graft.sf core.init: Rosetta version exported from http://www.rosettacommons.org core.init: command: /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/main/source/bin/antibody_graft.linuxgccrelease -database /home/cyril/StageDeRecherche/rosetta_2014.22.56873_bundle/main/database -overwrite -s FR.pdb -antibody::h3_no_stem_graft -scorefile score-graft.sf core.init: 'RNG device' seed mode, using '/dev/urandom', seed=-1506221484 seed_offset=0 real_seed=-1506221484 core.init.random: RandomGenerator:init: Normal mode, seed=-1506221484 RG_type=mt19937 protocols.antibody.GraftCDRLoopsProtocol: Setting default settings protocols.antibody.GraftCDRLoopsProtocol: Reading Options core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2013 core.scoring.etable: Starting energy table calculation core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6) core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6) core.scoring.etable: Finished calculating energy tables. basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBPoly1D.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBFadeIntervals.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBEval.csv basic.io.database: Database file opened: scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4 basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_pp protocols.antibody: //////////////////////////////////////////////////////////////////////////////// protocols.antibody: /// Rosetta 3 Antibody Modeler /// protocols.antibody: /// CDR Assembling /// protocols.antibody: /// /// protocols.antibody: /// Graft_l1: 1 protocols.antibody: /// Graft_l2: 1 protocols.antibody: /// Graft_l3: 1 protocols.antibody: /// Graft_h1: 1 protocols.antibody: /// Graft_h2: 1 protocols.antibody: /// Graft_h3: 1 protocols.antibody: /// camelid: 0 protocols.antibody: //////////////////////////////////////////////////////////////////////////////// protocols.antibody: protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs protocols.jd2.PDBJobInputter: pushed FR.pdb nstruct index 1 protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from PDB FR.pdb core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set. Created 722 residue types core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue SER 7 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG on residue SER 7 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ILE 90 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG1 on residue ILE 90 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG2 on residue ILE 90 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 90 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue SER 109 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG on residue SER 109 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue ARG:CtermProteinFull 113 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue THR 141 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG1 on residue THR 141 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG2 on residue THR 141 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue HIS 145 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue HIS 145 core.conformation.Conformation: [ WARNING ] missing heavyatom: ND1 on residue HIS 145 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue HIS 145 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue HIS 145 core.conformation.Conformation: [ WARNING ] missing heavyatom: NE2 on residue HIS 145 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue HIS 145 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue MET 163 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue MET 163 core.conformation.Conformation: [ WARNING ] missing heavyatom: SD on residue MET 163 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue MET 163 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue THR 169 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG1 on residue THR 169 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG2 on residue THR 169 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue PHE 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue PHE 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue PHE 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue PHE 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue PHE 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue PHE 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue PHE 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue PHE 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue PHE 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue PHE 172 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue PRO 174 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue PRO 174 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue PRO 174 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ILE 182 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG1 on residue ILE 182 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG2 on residue ILE 182 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 182 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ARG 200 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ARG 200 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue ARG 200 core.conformation.Conformation: [ WARNING ] missing heavyatom: NE on residue ARG 200 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue ARG 200 core.conformation.Conformation: [ WARNING ] missing heavyatom: NH1 on residue ARG 200 core.conformation.Conformation: [ WARNING ] missing heavyatom: NH2 on residue ARG 200 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue THR 210 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG1 on residue THR 210 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG2 on residue THR 210 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ARG 213 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ARG 213 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue ARG 213 core.conformation.Conformation: [ WARNING ] missing heavyatom: NE on residue ARG 213 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue ARG 213 core.conformation.Conformation: [ WARNING ] missing heavyatom: NH1 on residue ARG 213 core.conformation.Conformation: [ WARNING ] missing heavyatom: NH2 on residue ARG 213 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ASP 214 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ASP 214 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD1 on residue ASP 214 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD2 on residue ASP 214 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue PHE 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue PHE 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue PHE 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue PHE 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue PHE 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue PHE 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue PHE 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue PHE 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue PHE 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue PHE 215 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue SER 216 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG on residue SER 216 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: NE1 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE3 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ2 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ3 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CH2 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE3 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ3 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE3 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue TRP 217 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue PHE 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue PHE 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue PHE 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue PHE 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue PHE 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue PHE 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue PHE 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue PHE 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue PHE 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue PHE 218 core.conformation.Conformation: [ WARNING ] missing heavyatom: CB on residue ALA 219 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue SER:CtermProteinFull 230 core.conformation.Conformation: Found disulfide between residues 23 93 core.conformation.Conformation: current variant for 23 CYS core.conformation.Conformation: current variant for 93 CYS core.conformation.Conformation: current variant for 23 CYD core.conformation.Conformation: current variant for 93 CYD core.conformation.Conformation: Found disulfide between residues 135 209 core.conformation.Conformation: current variant for 135 CYS core.conformation.Conformation: current variant for 209 CYS core.conformation.Conformation: current variant for 135 CYD core.conformation.Conformation: current variant for 209 CYD core.pack.task: Packer task: initialize from command line() core.pack.pack_missing_sidechains: packing residue number 7 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 90 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 109 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 141 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 145 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 163 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 169 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 172 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 174 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 182 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 200 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 210 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 213 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 214 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 215 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 216 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 217 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 218 because of missing atom number 5 atom name CB core.pack.pack_missing_sidechains: packing residue number 219 because of missing atom number 5 atom name CB core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2013 core.pack.dunbrack: Dunbrack 2010 library took 0.042064 seconds to load from binary core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.pack_rotamers: built 318 rotamers at 19 positions. core.pack.pack_rotamers: IG: 37788 bytes protocols.antibody.GraftCDRLoopsProtocol: in the apply function protocols.antibody.GraftCDRLoopsProtocol: AAAAAAAA cst_weight: 0 protocols.antibody.GraftCDRLoopsProtocol: Danger Will Robinson! Native is an impostor! protocols.antibody.GraftCDRLoopsProtocol: 'native_pose' is just a copy of the 'input_pose' protocols.antibody.GraftCDRLoopsProtocol: since you didn't sepcifiy the native pdb name basic.io.database: Database file opened: sampling/antibodies/cluster_center_dihedrals.txt protocols.antibody.AntibodyNumberingParser: Antibody numbering scheme definitions read successfully protocols.antibody.AntibodyNumberingParser: Antibody CDR definition read successfully antibody.AntibodyInfo: Successfully finished the CDR definition antibody.AntibodyInfo: AC Detecting Regular CDR H3 Stem Type antibody.AntibodyInfo: TRDRDFSWFAYW antibody.AntibodyInfo: AC Finished Detecting Regular CDR H3 Stem Type: KINKED antibody.AntibodyInfo: AC Finished Detecting Regular CDR H3 Stem Type: Kink: 1 Extended: 0 protocols.loops.util: checking peptide bond geometry: protocols.loops.util: checking peptide bond geometry: protocols.loops.util: checking peptide bond geometry: protocols.loops.util: 100 H C-N 8.8243 max: 2 protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job FR_0001H3peptide bond geometry issues at loop position 100 H Please check pdb for large chainbreaks or missing density. Loop modeling applications can be used to close loops or create residues in the loop from missing density. You can OVERRIDE this check by passing the flag -check_cdr_chainbreaks false protocols.jd2.JobDistributor: protocols.jd2.JobDistributor: FR_0001 reported that its input was bad and will not retry protocols.jd2.FileSystemJobDistributor: job failed, reporting bad input; other jobs of same input will be canceled: FR_0001 protocols.jd2.JobDistributor: no more batches to process... protocols.jd2.JobDistributor: 1 jobs considered, 1 jobs attempted in 0 seconds