-in -file -s 'target.pdb eza.pdb' # -extra_res_fa eza.params -docking -ligand -minimize_ligand true -pH -pH_mode true -keep_input_protonation_state true -stepwise -polar_hydrogens -vary_polar_hydrogen_geometry true -exclude_nonclashing_positions true -packing -ex1 -ex1aro -ex2 -extrachi_cutoff 0 -no_optH false -flip_HNQ true # -ignore_ligand_chi false -parser -protocol Dock_coupledmoves.xml -qsar -max_grid_cache_size 1 -analytic_etable_evaluation true