##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02ac57
[COMMIT_DATE]: 2021-04-20T11:45:16.822269
[APPLICATION]: /Users/ncohen/Desktop/rosetta/main/source/bin//trRosetta.tensorflow.macosclangdebug
[MODE]: Debug
[EXTRAS]: tensorflow 
[OS]: Apple Mac OS X
[COMPILER]: Clang version "12.0.5 (clang-1205.0.22.9)"
[STDLIB]: libc++ version 12000
[START_OPTIONS]
 -in:file:fasta=r10_1.fasta -trRosetta:msa_file=r10-old.a3m -trRosetta:backbone_randomization_mode=ramachandran -trRosetta:mutate_gly_to_ala=false

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
1   libutility.dylib                    0x000000014b9cd040 utility::save_crash_report(char const*, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) + 64
2   libutility.dylib                    0x000000014b9ca3cb utility::save_crash_report(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) + 43
3   libutility.dylib                    0x000000014b9ca0e1 handle_assert_failure(char const*, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) + 641
4   libprotocols_a.2.dylib              0x00000001311a4882 basic::tensorflow_manager::RosettaTensorflowTensorContainer<int>::operator()(unsigned long, unsigned long) + 882
5   libprotocols_a.2.dylib              0x00000001311a345b protocols::trRosetta::trRosettaMultipleSequenceAlignment::initialize_from_file_contents(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 2347
6   libprotocols_a.2.dylib              0x00000001311a2a95 protocols::trRosetta::trRosettaMultipleSequenceAlignment::trRosettaMultipleSequenceAlignment(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 101
7   libprotocols_a.2.dylib              0x00000001311a368d protocols::trRosetta::trRosettaMultipleSequenceAlignment::trRosettaMultipleSequenceAlignment(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 29
8   libprotocols_a.2.dylib              0x00000001311b4438 std::__1::__compressed_pair_elem<protocols::trRosetta::trRosettaMultipleSequenceAlignment, 1, false>::__compressed_pair_elem<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, 0ul>(std::__1::piecewise_construct_t, std::__1::tuple<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>, std::__1::__tuple_indices<0ul>) + 56
9   libprotocols_a.2.dylib              0x00000001311b43a5 std::__1::__compressed_pair<std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>, protocols::trRosetta::trRosettaMultipleSequenceAlignment>::__compressed_pair<std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>(std::__1::piecewise_construct_t, std::__1::tuple<std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>&>, std::__1::tuple<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>) + 101
10  libprotocols_a.2.dylib              0x00000001311b40f5 std::__1::__compressed_pair<std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>, protocols::trRosetta::trRosettaMultipleSequenceAlignment>::__compressed_pair<std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>(std::__1::piecewise_construct_t, std::__1::tuple<std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>&>, std::__1::tuple<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>) + 37
11  libprotocols_a.2.dylib              0x00000001311b3ff1 std::__1::__shared_ptr_emplace<protocols::trRosetta::trRosettaMultipleSequenceAlignment, std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment> >::__shared_ptr_emplace<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>(std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 113
12  libprotocols_a.2.dylib              0x00000001311b3bbd std::__1::__shared_ptr_emplace<protocols::trRosetta::trRosettaMultipleSequenceAlignment, std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment> >::__shared_ptr_emplace<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>(std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 29
13  libprotocols_a.2.dylib              0x00000001311b2f3e std::__1::enable_if<!(is_array<protocols::trRosetta::trRosettaMultipleSequenceAlignment>::value), std::__1::shared_ptr<protocols::trRosetta::trRosettaMultipleSequenceAlignment> >::type std::__1::make_shared<protocols::trRosetta::trRosettaMultipleSequenceAlignment, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 190
14  libprotocols_a.2.dylib              0x00000001311b2b11 protocols::trRosetta::trRosettaProtocolBase::set_input_msa_file(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 769
15  libprotocols_b.6.dylib              0x000000011334cc38 protocols::trRosetta_protocols::constraint_generators::trRosettaConstraintGenerator::load_msa_and_run_neural_network() const + 1192
16  libprotocols_b.6.dylib              0x000000011334c73a protocols::trRosetta_protocols::constraint_generators::trRosettaConstraintGenerator::apply(core::pose::Pose const&) const + 90
17  libprotocols_b.6.dylib              0x0000000113b9c84e protocols::trRosetta_protocols::movers::trRosettaProtocolMover::generate_trRosetta_constraints(core::pose::Pose const&, double) const + 1086
18  libprotocols_b.6.dylib              0x0000000113b9a0fe protocols::trRosetta_protocols::movers::trRosettaProtocolMover::apply(core::pose::Pose&) + 2558
19  libprotocols.1.dylib                0x0000000131fa5b41 protocols::jd2::JobDistributor::run_one_job(std::__1::shared_ptr<protocols::moves::Mover>&, long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, unsigned long&, unsigned long&, bool) + 8833
20  libprotocols.1.dylib                0x0000000131fa2eae protocols::jd2::JobDistributor::go_main(std::__1::shared_ptr<protocols::moves::Mover>) + 222
21  libprotocols.1.dylib                0x0000000131f8d3a8 protocols::jd2::FileSystemJobDistributor::go(std::__1::shared_ptr<protocols::moves::Mover>) + 72
22  trRosetta.tensorflow.macosclangdebu 0x00000001046e837c main + 284
23  libdyld.dylib                       0x00007fff20609f3d start + 1
24  ???                                 0x0000000000000002 0x0 + 2

[END_BACKTRACE]

[FILE]: src/basic/tensorflow_manager/RosettaTensorflowTensorContainer.hh
[LINE]: 254
[START_MESSAGE]

ERROR: Assertion `coord1 > 0 && coord1 <= static_cast<platform::Size>( TF_Dim(tensor_, 0) )` failed.
ERROR:: Exit from: src/basic/tensorflow_manager/RosettaTensorflowTensorContainer.hh line: 254


[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02ac57
[COMMIT_DATE]: 2021-04-20T11:45:16.822269
[APPLICATION]: /Users/ncohen/Desktop/rosetta/main/source/bin//trRosetta.tensorflow.macosclangdebug
[MODE]: Debug
[EXTRAS]: tensorflow 
[OS]: Apple Mac OS X
[COMPILER]: Clang version "12.0.5 (clang-1205.0.22.9)"
[STDLIB]: libc++ version 12000
[START_OPTIONS]
 -in:file:fasta=r10_1.fasta -trRosetta:msa_file=r10-old.a3m -trRosetta:backbone_randomization_mode=ramachandran -trRosetta:mutate_gly_to_ala=false

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
1   libutility.dylib                    0x00000001533eb040 utility::save_crash_report(char const*, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) + 64
2   libutility.dylib                    0x00000001533e83cb utility::save_crash_report(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) + 43
3   libutility.dylib                    0x00000001533e80e1 handle_assert_failure(char const*, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) + 641
4   libprotocols_a.2.dylib              0x0000000138bc2882 basic::tensorflow_manager::RosettaTensorflowTensorContainer<int>::operator()(unsigned long, unsigned long) + 882
5   libprotocols_a.2.dylib              0x0000000138bc145b protocols::trRosetta::trRosettaMultipleSequenceAlignment::initialize_from_file_contents(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 2347
6   libprotocols_a.2.dylib              0x0000000138bc0a95 protocols::trRosetta::trRosettaMultipleSequenceAlignment::trRosettaMultipleSequenceAlignment(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 101
7   libprotocols_a.2.dylib              0x0000000138bc168d protocols::trRosetta::trRosettaMultipleSequenceAlignment::trRosettaMultipleSequenceAlignment(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 29
8   libprotocols_a.2.dylib              0x0000000138bd2438 std::__1::__compressed_pair_elem<protocols::trRosetta::trRosettaMultipleSequenceAlignment, 1, false>::__compressed_pair_elem<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, 0ul>(std::__1::piecewise_construct_t, std::__1::tuple<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>, std::__1::__tuple_indices<0ul>) + 56
9   libprotocols_a.2.dylib              0x0000000138bd23a5 std::__1::__compressed_pair<std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>, protocols::trRosetta::trRosettaMultipleSequenceAlignment>::__compressed_pair<std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>(std::__1::piecewise_construct_t, std::__1::tuple<std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>&>, std::__1::tuple<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>) + 101
10  libprotocols_a.2.dylib              0x0000000138bd20f5 std::__1::__compressed_pair<std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>, protocols::trRosetta::trRosettaMultipleSequenceAlignment>::__compressed_pair<std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>(std::__1::piecewise_construct_t, std::__1::tuple<std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>&>, std::__1::tuple<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>) + 37
11  libprotocols_a.2.dylib              0x0000000138bd1ff1 std::__1::__shared_ptr_emplace<protocols::trRosetta::trRosettaMultipleSequenceAlignment, std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment> >::__shared_ptr_emplace<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>(std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 113
12  libprotocols_a.2.dylib              0x0000000138bd1bbd std::__1::__shared_ptr_emplace<protocols::trRosetta::trRosettaMultipleSequenceAlignment, std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment> >::__shared_ptr_emplace<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>(std::__1::allocator<protocols::trRosetta::trRosettaMultipleSequenceAlignment>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 29
13  libprotocols_a.2.dylib              0x0000000138bd0f3e std::__1::enable_if<!(is_array<protocols::trRosetta::trRosettaMultipleSequenceAlignment>::value), std::__1::shared_ptr<protocols::trRosetta::trRosettaMultipleSequenceAlignment> >::type std::__1::make_shared<protocols::trRosetta::trRosettaMultipleSequenceAlignment, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&>(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 190
14  libprotocols_a.2.dylib              0x0000000138bd0b11 protocols::trRosetta::trRosettaProtocolBase::set_input_msa_file(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 769
15  libprotocols_b.6.dylib              0x000000011a5d2c38 protocols::trRosetta_protocols::constraint_generators::trRosettaConstraintGenerator::load_msa_and_run_neural_network() const + 1192
16  libprotocols_b.6.dylib              0x000000011a5d273a protocols::trRosetta_protocols::constraint_generators::trRosettaConstraintGenerator::apply(core::pose::Pose const&) const + 90
17  libprotocols_b.6.dylib              0x000000011ae2284e protocols::trRosetta_protocols::movers::trRosettaProtocolMover::generate_trRosetta_constraints(core::pose::Pose const&, double) const + 1086
18  libprotocols_b.6.dylib              0x000000011ae200fe protocols::trRosetta_protocols::movers::trRosettaProtocolMover::apply(core::pose::Pose&) + 2558
19  libprotocols.1.dylib                0x00000001399c3b41 protocols::jd2::JobDistributor::run_one_job(std::__1::shared_ptr<protocols::moves::Mover>&, long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, unsigned long&, unsigned long&, bool) + 8833
20  libprotocols.1.dylib                0x00000001399c0eae protocols::jd2::JobDistributor::go_main(std::__1::shared_ptr<protocols::moves::Mover>) + 222
21  libprotocols.1.dylib                0x00000001399ab3a8 protocols::jd2::FileSystemJobDistributor::go(std::__1::shared_ptr<protocols::moves::Mover>) + 72
22  trRosetta.tensorflow.macosclangdebu 0x000000010c08f37c main + 284
23  libdyld.dylib                       0x00007fff20609f3d start + 1
24  ???                                 0x0000000000000002 0x0 + 2

[END_BACKTRACE]

[FILE]: src/basic/tensorflow_manager/RosettaTensorflowTensorContainer.hh
[LINE]: 254
[START_MESSAGE]

ERROR: Assertion `coord1 > 0 && coord1 <= static_cast<platform::Size>( TF_Dim(tensor_, 0) )` failed.
ERROR:: Exit from: src/basic/tensorflow_manager/RosettaTensorflowTensorContainer.hh line: 254


[END_MESSAGE]
[END_CRASH_REPORT]