##############################################################################################################
#
# Rosetta crash log. 
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2019.42+release.3666509
[COMMIT_DATE]: 2019-10-21T15:15:58.729973
[APPLICATION]: /home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/bin/remodel.linuxgccrelease
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version "7.4.0"
[STDLIB]: libstdc++ version 20181206
[START_OPTIONS]
 -in:file:s=input_files/3gbn_missing_cterm.pdb -out:file:scorefile=3gbn_missing_cterm.sc -out:path:all=output_files/ -run:chain= -remodel:blueprint=input_files/3gbn_missing_cterm.remodel -remodel:num_trajectory=1 -remodel:quick_and_dirty 

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libcore.6.so(backtrace_string[abi:cxx11](int)+0x56) [0x7f3b576409c6]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe3) [0x7f3b53c37813]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libcore.5.so(core::pack::task::onError(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)+0xbd) [0x7f3b4f15f6fd]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libcore.5.so(core::pack::task::ResfileContents::parse_resid(unsigned long&, utility::vector1<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, unsigned long, int&, int&, char&, char&, char&, core::pack::task::ResfileContents::residue_identifier_type&) const+0x484) [0x7f3b4f15ffc4]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libcore.5.so(core::pack::task::ResfileContents::parse_body_line(core::pose::Pose const&, utility::vector1<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::map<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::shared_ptr<core::pack::task::ResfileCommand>, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::shared_ptr<core::pack::task::ResfileCommand> > > > const&, unsigned long, utility::vector1<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > >, std::allocator<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > > > >&, utility::vector1<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > >, std::allocator<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > > > >&)+0x9e) [0x7f3b4f162d5e]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libcore.5.so(core::pack::task::ResfileContents::ResfileContents(core::pose::Pose const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::istream&)+0x536) [0x7f3b4f166826]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libcore.5.so(core::pack::task::parse_resfile_string(core::pose::Pose const&, core::pack::task::PackerTask&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, utility::vector1<bool, std::allocator<bool> > const&)+0x64) [0x7f3b4f166cd4]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libcore.5.so(core::pack::task::parse_resfile_string(core::pose::Pose const&, core::pack::task::PackerTask&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x88) [0x7f3b4f167258]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelWorkingSet::manualPackerTaskGen(core::pose::Pose const&, protocols::forge::remodel::RemodelData const&)+0xa6) [0x7f3b588f94d6]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelDesignMover::apply(core::pose::Pose&)+0x325) [0x7f3b58887cb5]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelMover::apply(core::pose::Pose&)+0x567d) [0x7f3b588e985d]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0xc9c) [0x7f3b582d5bac]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x1bb) [0x7f3b582d784b]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x56) [0x7f3b582be376]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/bin/remodel.linuxgccrelease(+0xc9ad) [0x7f3b5940c9ad]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/bin/remodel.linuxgccrelease(+0xbc9c) [0x7f3b5940bc9c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7) [0x7f3b52e01b97]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/bin/remodel.linuxgccrelease(+0xc12a) [0x7f3b5940c12a]

[END_BACKTRACE]

[FILE]: src/core/pack/task/ResfileReader.cc
[LINE]: 1579
[START_MESSAGE]
On line 3, the chain identifier 'PIKAA' must be just a single character in [_A-Za-z] (note the chain identifier is case sensitive).

[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. 
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2019.42+release.3666509
[COMMIT_DATE]: 2019-10-21T15:15:58.729973
[APPLICATION]: /home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/bin/remodel.linuxgccrelease
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version "7.4.0"
[STDLIB]: libstdc++ version 20181206
[START_OPTIONS]
 -in:file:s=input_files/3gbn_missing_cterm.pdb -out:file:scorefile=3gbn_missing_cterm.sc -out:path:all=output_files/ -run:chain= -remodel:blueprint=input_files/3gbn_missing_cterm.remodel -remodel:num_trajectory=1 -remodel:quick_and_dirty 

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libcore.6.so(backtrace_string[abi:cxx11](int)+0x56) [0x7f3b576409c6]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe3) [0x7f3b53c37813]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x800) [0x7f3b582d7e90]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/7/default/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x56) [0x7f3b582be376]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/bin/remodel.linuxgccrelease(+0xc9ad) [0x7f3b5940c9ad]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/bin/remodel.linuxgccrelease(+0xbc9c) [0x7f3b5940bc9c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7) [0x7f3b52e01b97]
/home/lanselibai/software/rosetta_src_2019.42.60994_bundle/main/source/bin/remodel.linuxgccrelease(+0xc12a) [0x7f3b5940c12a]

[END_BACKTRACE]

[FILE]: src/protocols/jd2/JobDistributor.cc
[LINE]: 327
[START_MESSAGE]
1 jobs failed; check output for error messages

[END_MESSAGE]
[END_CRASH_REPORT]