############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: /usr/local/apps/rosetta/2021.16/bin/rosetta_scripts [MODE]: Release [EXTRAS]: cxx11thread [OS]: GNU/Linux [COMPILER]: GCC version "9.2.0" [STDLIB]: libstdc++ version 20190812 [START_OPTIONS] -in:file:s=sketch.pdb -parser:protocol=make_fragments.xml -parser:script_vars=vall=/usr/local/apps/rosetta/2021.16/main/tools/fragment_tools/vall.jul19.2011.gz [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libutility.so(utility::save_crash_report(char const*, std::__cxx11::basic_string, std::allocator > const&, int)+0x24) [0x2aaab8e15354] /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libutility.so(utility::signal_handler(int)+0xd4) [0x2aaab8e15464] /lib64/libc.so.6(+0x362f0) [0x2aaaba9962f0] /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libprotocols_a.6.so(protocols::cyclic_peptide::PeptideStubMover::handle_termini_and_store_terminal_dihedrals(core::pose::Pose&, unsigned long, unsigned long, unsigned long, unsigned long&, double&, double&, double&, double&, bool&, bool&)+0x182) [0x2aaaae107652] /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libprotocols_a.6.so(protocols::cyclic_peptide::PeptideStubMover::append_by_bond(core::pose::Pose&, unsigned long, core::conformation::Residue&, unsigned long)+0xa0) [0x2aaaae10a9a0] /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libprotocols_a.6.so(protocols::cyclic_peptide::PeptideStubMover::perform_single_iteration(core::pose::Pose&, core::chemical::ResidueTypeSet const&, unsigned long)+0x84) [0x2aaaae10b974] /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libprotocols_a.6.so(protocols::cyclic_peptide::PeptideStubMover::apply(core::pose::Pose&)+0xb6) [0x2aaaae10ba86] /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x22f) [0x2aaab375da3f] /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x1d) [0x2aaab375decd] /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator > >)+0x40) [0x2aaab375e580] /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x1ce) [0x2aaab3762d2e] /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr&, long, std::__cxx11::basic_string, std::allocator >&, std::__cxx11::basic_string, std::allocator >&, unsigned long&, unsigned long&, bool)+0x298d) [0x2aaab390031d] /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr)+0x220) [0x2aaab39014a0] /usr/local/apps/rosetta/2021.16_gcc-9.2.0_openmpi-4.0.5_1621611590/main/source/build/src/release/linux/3.10/64/x86/gcc/9.2/cxx11thread/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr)+0x43) [0x2aaab38e9613] /usr/local/apps/rosetta/2021.16/bin/rosetta_scripts() [0x40483f] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2aaaba982445] /usr/local/apps/rosetta/2021.16/bin/rosetta_scripts() [0x404a9b] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT]