############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: /usr/local/rosetta_src_2021.16.61629_bundle/main/source/bin/mr_protocols.python.linuxgccrelease [MODE]: Release [EXTRAS]: python [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-44)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in:ignore_unrecognized_res -in:path:database=/usr/local/rosetta_src_2021.16.61629_bundle/main/database/ -in:file:fasta=/home/crystallography/Documents/AbPmrAC/2403/MR_ROSETTA_16/GROUP_OF_ROSETTA_REBUILD_1/RUN_5/EDITED_AbPmrAC.seq -in:file:alignment=/home/crystallography/Documents/AbPmrAC/2403/MR_ROSETTA_16/GROUP_OF_PLACE_MODEL_1/RUN_1/edited_align.ali -in:file:extended_pose=1 -in:file:template_pdb=/home/crystallography/Documents/AbPmrAC/2403/MR_ROSETTA_16/GROUP_OF_PLACE_MODEL_1/RUN_1/AutoMR_run_1_/2GWR_mr.5_one.pdb -out:overwrite -out:nstruct=20 -edensity:mapfile=/home/crystallography/Documents/AbPmrAC/2403/MR_ROSETTA_16/GROUP_OF_PLACE_MODEL_1/RUN_1/AutoBuild_run_5_/overall_best_denmod_map_coeffs_nf.map -edensity:mapreso=3 -edensity:grid_spacing=1.5 -MR:max_gaplength_to_model=8 -MR:mode=cm [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /usr/local/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/python/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x7f13a0085775] /usr/local/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/python/libutility.so(utility::signal_handler(int)+0xaa) [0x7f13a00858aa] /lib64/libc.so.6(+0x36400) [0x7f139cf17400] /usr/local/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/python/libcore.3.so(core::pose::Pose::operator=(core::pose::Pose const&)+0xe7) [0x7f13a2486a47] /usr/local/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/python/libcore.3.so(core::pose::Pose::Pose(core::pose::Pose const&)+0x272) [0x7f13a24875b2] /usr/local/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/python/libprotocols_g.5.so(protocols::comparative_modeling::ThreadingMover::ThreadingMover(core::sequence::SequenceAlignment const&, core::pose::Pose const&)+0x7a) [0x7f13aaa75daa] /usr/local/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/python/libprotocols_g.5.so(protocols::comparative_modeling::ThreadingJobInputter::pose_from_job(core::pose::Pose&, std::shared_ptr)+0x453) [0x7f13aaa70f43] /usr/local/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/python/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr&, long, std::string&, std::string&, unsigned long&, unsigned long&, bool)+0x6ae) [0x7f13a5f81ebe] /usr/local/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/python/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr)+0xc1) [0x7f13a5f84181] /usr/local/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/python/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr)+0x4a) [0x7f13a5f72afa] /usr/local/rosetta_src_2021.16.61629_bundle/main/source/bin/mr_protocols.python.linuxgccrelease() [0x418739] /usr/local/rosetta_src_2021.16.61629_bundle/main/source/bin/mr_protocols.python.linuxgccrelease() [0x414ff3] /lib64/libc.so.6(__libc_start_main+0xf5) [0x7f139cf03555] /usr/local/rosetta_src_2021.16.61629_bundle/main/source/bin/mr_protocols.python.linuxgccrelease() [0x41518e] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT]