############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:52:25.363712 [APPLICATION]: rosetta_scripts.static.linuxgccrelease [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-39)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -parser:protocol=merge_8.xml -parser:view [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x63c9650] [0x63c83d3] [0x6473556] [0x3b69e2e] [0x3b6ab11] [0x3c06ba8] [0x651caa] [0x4196ed] [0x6beae64] [0x6beb0e1] [0x651b96] [END_BACKTRACE] [FILE]: src/protocols/jd2/JobDistributor.cc [LINE]: 631 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Attempting to initiate job distribution for input job 'S', but the generated pose has no residues.make sure you specified a valid input PDB, silent file or database. If this is intended, use the flag '-input_empty_pose true' (we check this to quickly curb silly mistakes, such as accidentally providing pdb (or other input) files with no atoms) [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:52:25.363712 [APPLICATION]: rosetta_scripts.static.linuxgccrelease [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-39)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -parser:protocol=merge_8.xml -parser:view -jd2:input_empty_pose [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x63c9650] [0x63c83d3] [0x3aead02] [0x3aeb682] [0x3aebc7b] [0x3aec194] [0x3aecbdd] [0x3b695c6] [0x3b6ab11] [0x3c06ba8] [0x651caa] [0x4196ed] [0x6beae64] [0x6beb0e1] [0x651b96] [END_BACKTRACE] [FILE]: src/protocols/rosetta_scripts/RosettaScriptsParser.cc [LINE]: 1207 [START_MESSAGE] Input rosetta scripts XML file "merge_8.xml" failed to validate against the rosetta scripts schema. Use the option -parser::output_schema to output the schema to a file to see all valid options. Your XML has failed validation. The error message below will tell you where in your XML file the error occurred. Here's how to fix it: 1) If the validation fails on something obvious, like an illegal attribute due to a spelling error (perhaps you used scorefnction instead of scorefunction), then you need to fix your XML file. 2) If you haven't run the XML rewriter script and this might be pre-2017 Rosetta XML, run the rewriter script (tools/xsd_xrw/rewrite_rosetta_script.py) on your input XML first. The attribute values not being in quotes (scorefunction=talaris2014 instead of scorefunction="talaris2014") is a good indicator that this is your problem. 3) If you are a developer and neither 1 nor 2 worked - email the developer's mailing list or try Slack. 4) If you are an academic or commercial user - try the Rosetta Forums https://www.rosettacommons.org/forum Error messages were: From line 3: Error: Element 'tala': This element is not expected. Expected is ( ScoreFunction ). 1: 2: 3: 4: 5: 6: 7: 8: ------------------------------------------------------------ Warning messages were: ------------------------------------------------------------ [END_MESSAGE] [END_CRASH_REPORT]