##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.36+release.57ac713
[COMMIT_DATE]: 2021-09-12T14:23:57.882909
[APPLICATION]: /home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease
[MODE]: Release
[EXTRAS]: mpi (OpenMPI 3.1.6) 
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in -in:path:database=/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/database/ -in:file -in:file:s=3PBL_A.pdb ETQ.pdb -in:file:extra_res_fa=ETQ.params -out:overwrite -out:nstruct=5 -parser -parser:protocol=dock.xml -packing -packing:ignore_ligand_chi -packing:no_optH=false -packing:flip_HNQ -packing:ex1 -packing:ex2 -mistakes -mistakes:restore_pre_talaris_2013_behavior

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7ff51e9d82aa]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7ff51e9220b3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libcore.3.so(+0x6b19e1) [0x7ff51679a9e1]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols_h.5.so(protocols::ligand_docking::Transform::apply(core::pose::Pose&)+0xac) [0x7ff51d0a8e6c]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x268) [0x7ff51f937558]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x21) [0x7ff51f937a51]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x40) [0x7ff51f938270]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x2be) [0x7ff51f93c7fe]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7ff51fad75d4]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7ff51fad8b48]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7ff51fac01b7]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4a96) [0x564481b4da96]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7ff51e2860b3]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4d3e) [0x564481b4dd3e]

[END_BACKTRACE]

[FILE]: src/core/pose/chains_util.cc
[LINE]: 453
[START_MESSAGE]
 chain_id X does not exist

[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.36+release.57ac713
[COMMIT_DATE]: 2021-09-12T14:23:57.882909
[APPLICATION]: /home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease
[MODE]: Release
[EXTRAS]: mpi (OpenMPI 3.1.6) 
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in -in:path:database=/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/database/ -in:file -in:file:s=3PBL_A.pdb ETQ.pdb -in:file:extra_res_fa=ETQ.params -out:overwrite -out:nstruct=5 -parser -parser:protocol=dock.xml -packing -packing:ignore_ligand_chi -packing:no_optH=false -packing:flip_HNQ -packing:ex1 -packing:ex2 -mistakes -mistakes:restore_pre_talaris_2013_behavior

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7ff51e9d82aa]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7ff51e9220b3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libcore.3.so(+0x6b19e1) [0x7ff51679a9e1]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols_h.5.so(protocols::ligand_docking::Transform::apply(core::pose::Pose&)+0xac) [0x7ff51d0a8e6c]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x268) [0x7ff51f937558]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x21) [0x7ff51f937a51]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x40) [0x7ff51f938270]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x2be) [0x7ff51f93c7fe]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7ff51fad75d4]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7ff51fad8b48]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7ff51fac01b7]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4a96) [0x564481b4da96]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7ff51e2860b3]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4d3e) [0x564481b4dd3e]

[END_BACKTRACE]

[FILE]: src/core/pose/chains_util.cc
[LINE]: 453
[START_MESSAGE]
 chain_id X does not exist

[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.36+release.57ac713
[COMMIT_DATE]: 2021-09-12T14:23:57.882909
[APPLICATION]: /home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease
[MODE]: Release
[EXTRAS]: mpi (OpenMPI 3.1.6) 
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in -in:path:database=/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/database/ -in:file -in:file:s=3PBL_A.pdb ETQ.pdb -in:file:extra_res_fa=ETQ.params -out:overwrite -out:nstruct=5 -parser -parser:protocol=dock.xml -packing -packing:ignore_ligand_chi -packing:no_optH=false -packing:flip_HNQ -packing:ex1 -packing:ex2 -mistakes -mistakes:restore_pre_talaris_2013_behavior

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7ff51e9d82aa]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7ff51e9220b3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libcore.3.so(+0x6b19e1) [0x7ff51679a9e1]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols_h.5.so(protocols::ligand_docking::Transform::apply(core::pose::Pose&)+0xac) [0x7ff51d0a8e6c]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x268) [0x7ff51f937558]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x21) [0x7ff51f937a51]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x40) [0x7ff51f938270]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x2be) [0x7ff51f93c7fe]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7ff51fad75d4]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7ff51fad8b48]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7ff51fac01b7]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4a96) [0x564481b4da96]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7ff51e2860b3]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4d3e) [0x564481b4dd3e]

[END_BACKTRACE]

[FILE]: src/core/pose/chains_util.cc
[LINE]: 453
[START_MESSAGE]
 chain_id X does not exist

[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.36+release.57ac713
[COMMIT_DATE]: 2021-09-12T14:23:57.882909
[APPLICATION]: /home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease
[MODE]: Release
[EXTRAS]: mpi (OpenMPI 3.1.6) 
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in -in:path:database=/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/database/ -in:file -in:file:s=3PBL_A.pdb ETQ.pdb -in:file:extra_res_fa=ETQ.params -out:overwrite -out:nstruct=5 -parser -parser:protocol=dock.xml -packing -packing:ignore_ligand_chi -packing:no_optH=false -packing:flip_HNQ -packing:ex1 -packing:ex2 -mistakes -mistakes:restore_pre_talaris_2013_behavior

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7ff51e9d82aa]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7ff51e9220b3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libcore.3.so(+0x6b19e1) [0x7ff51679a9e1]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols_h.5.so(protocols::ligand_docking::Transform::apply(core::pose::Pose&)+0xac) [0x7ff51d0a8e6c]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x268) [0x7ff51f937558]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x21) [0x7ff51f937a51]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x40) [0x7ff51f938270]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x2be) [0x7ff51f93c7fe]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7ff51fad75d4]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7ff51fad8b48]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7ff51fac01b7]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4a96) [0x564481b4da96]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7ff51e2860b3]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4d3e) [0x564481b4dd3e]

[END_BACKTRACE]

[FILE]: src/core/pose/chains_util.cc
[LINE]: 453
[START_MESSAGE]
 chain_id X does not exist

[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.36+release.57ac713
[COMMIT_DATE]: 2021-09-12T14:23:57.882909
[APPLICATION]: /home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease
[MODE]: Release
[EXTRAS]: mpi (OpenMPI 3.1.6) 
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in -in:path:database=/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/database/ -in:file -in:file:s=3PBL_A.pdb ETQ.pdb -in:file:extra_res_fa=ETQ.params -out:overwrite -out:nstruct=5 -parser -parser:protocol=dock.xml -packing -packing:ignore_ligand_chi -packing:no_optH=false -packing:flip_HNQ -packing:ex1 -packing:ex2 -mistakes -mistakes:restore_pre_talaris_2013_behavior

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7ff51e9d82aa]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7ff51e9220b3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libcore.3.so(+0x6b19e1) [0x7ff51679a9e1]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols_h.5.so(protocols::ligand_docking::Transform::apply(core::pose::Pose&)+0xac) [0x7ff51d0a8e6c]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x268) [0x7ff51f937558]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x21) [0x7ff51f937a51]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x40) [0x7ff51f938270]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x2be) [0x7ff51f93c7fe]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7ff51fad75d4]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7ff51fad8b48]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7ff51fac01b7]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4a96) [0x564481b4da96]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7ff51e2860b3]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4d3e) [0x564481b4dd3e]

[END_BACKTRACE]

[FILE]: src/core/pose/chains_util.cc
[LINE]: 453
[START_MESSAGE]
 chain_id X does not exist

[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.36+release.57ac713
[COMMIT_DATE]: 2021-09-12T14:23:57.882909
[APPLICATION]: /home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease
[MODE]: Release
[EXTRAS]: mpi (OpenMPI 3.1.6) 
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in -in:path:database=/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/database/ -in:file -in:file:s=3PBL_A.pdb ETQ.pdb -in:file:extra_res_fa=ETQ.params -out:overwrite -out:nstruct=5 -parser -parser:protocol=dock.xml -packing -packing:ignore_ligand_chi -packing:no_optH=false -packing:flip_HNQ -packing:ex1 -packing:ex2 -mistakes -mistakes:restore_pre_talaris_2013_behavior

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7ff51e9d82aa]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7ff51e9220b3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::UtilityExitException::UtilityExitException(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x113) [0x7ff51e9dd0e3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::exit(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)+0x3b) [0x7ff51e9dceab]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libcore.3.so(core::pose::get_jump_id_from_chain_id(unsigned long const&, core::pose::Pose const&)+0x2bf) [0x7ff516c3716f]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols_h.5.so(protocols::ligand_docking::Transform::apply(core::pose::Pose&)+0xc2) [0x7ff51d0a8e82]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x268) [0x7ff51f937558]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x21) [0x7ff51f937a51]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x40) [0x7ff51f938270]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x2be) [0x7ff51f93c7fe]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7ff51fad75d4]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7ff51fad8b48]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7ff51fac01b7]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4a96) [0x564481b4da96]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7ff51e2860b3]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4d3e) [0x564481b4dd3e]

[END_BACKTRACE]

[FILE]: src/core/pose/chains_util.cc
[LINE]: 496
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: Chain '1' is not directly built by any jump.



[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.36+release.57ac713
[COMMIT_DATE]: 2021-09-12T14:23:57.882909
[APPLICATION]: /home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease
[MODE]: Release
[EXTRAS]: mpi (OpenMPI 3.1.6) 
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in -in:path:database=/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/database/ -in:file -in:file:s=3PBL_A.pdb ETQ.pdb -in:file:extra_res_fa=ETQ.params -out:overwrite -out:nstruct=5 -parser -parser:protocol=dock.xml -packing -packing:ignore_ligand_chi -packing:no_optH=false -packing:flip_HNQ -packing:ex1 -packing:ex2 -mistakes -mistakes:restore_pre_talaris_2013_behavior

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7ff51e9d82aa]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7ff51e9220b3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::UtilityExitException::UtilityExitException(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x113) [0x7ff51e9dd0e3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::exit(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)+0x3b) [0x7ff51e9dceab]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libcore.3.so(core::pose::get_jump_id_from_chain_id(unsigned long const&, core::pose::Pose const&)+0x2bf) [0x7ff516c3716f]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols_h.5.so(protocols::ligand_docking::Transform::apply(core::pose::Pose&)+0xc2) [0x7ff51d0a8e82]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x268) [0x7ff51f937558]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x21) [0x7ff51f937a51]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x40) [0x7ff51f938270]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x2be) [0x7ff51f93c7fe]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7ff51fad75d4]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7ff51fad8b48]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7ff51fac01b7]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4a96) [0x564481b4da96]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7ff51e2860b3]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4d3e) [0x564481b4dd3e]

[END_BACKTRACE]

[FILE]: src/core/pose/chains_util.cc
[LINE]: 496
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: Chain '1' is not directly built by any jump.



[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.36+release.57ac713
[COMMIT_DATE]: 2021-09-12T14:23:57.882909
[APPLICATION]: /home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease
[MODE]: Release
[EXTRAS]: mpi (OpenMPI 3.1.6) 
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in -in:path:database=/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/database/ -in:file -in:file:s=3PBL_A.pdb ETQ.pdb -in:file:extra_res_fa=ETQ.params -out:overwrite -out:nstruct=5 -parser -parser:protocol=dock.xml -packing -packing:ignore_ligand_chi -packing:no_optH=false -packing:flip_HNQ -packing:ex1 -packing:ex2 -mistakes -mistakes:restore_pre_talaris_2013_behavior

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7ff51e9d82aa]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7ff51e9220b3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::UtilityExitException::UtilityExitException(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x113) [0x7ff51e9dd0e3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::exit(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)+0x3b) [0x7ff51e9dceab]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libcore.3.so(core::pose::get_jump_id_from_chain_id(unsigned long const&, core::pose::Pose const&)+0x2bf) [0x7ff516c3716f]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols_h.5.so(protocols::ligand_docking::Transform::apply(core::pose::Pose&)+0xc2) [0x7ff51d0a8e82]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x268) [0x7ff51f937558]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x21) [0x7ff51f937a51]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x40) [0x7ff51f938270]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x2be) [0x7ff51f93c7fe]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7ff51fad75d4]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7ff51fad8b48]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7ff51fac01b7]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4a96) [0x564481b4da96]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7ff51e2860b3]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4d3e) [0x564481b4dd3e]

[END_BACKTRACE]

[FILE]: src/core/pose/chains_util.cc
[LINE]: 496
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: Chain '1' is not directly built by any jump.



[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.36+release.57ac713
[COMMIT_DATE]: 2021-09-12T14:23:57.882909
[APPLICATION]: /home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease
[MODE]: Release
[EXTRAS]: mpi (OpenMPI 3.1.6) 
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in -in:path:database=/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/database/ -in:file -in:file:s=3PBL_A.pdb ETQ.pdb -in:file:extra_res_fa=ETQ.params -out:overwrite -out:nstruct=5 -parser -parser:protocol=dock.xml -packing -packing:ignore_ligand_chi -packing:no_optH=false -packing:flip_HNQ -packing:ex1 -packing:ex2 -mistakes -mistakes:restore_pre_talaris_2013_behavior

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7ff51e9d82aa]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7ff51e9220b3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::UtilityExitException::UtilityExitException(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x113) [0x7ff51e9dd0e3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::exit(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)+0x3b) [0x7ff51e9dceab]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libcore.3.so(core::pose::get_jump_id_from_chain_id(unsigned long const&, core::pose::Pose const&)+0x2bf) [0x7ff516c3716f]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols_h.5.so(protocols::ligand_docking::Transform::apply(core::pose::Pose&)+0xc2) [0x7ff51d0a8e82]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x268) [0x7ff51f937558]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x21) [0x7ff51f937a51]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x40) [0x7ff51f938270]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x2be) [0x7ff51f93c7fe]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7ff51fad75d4]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7ff51fad8b48]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7ff51fac01b7]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4a96) [0x564481b4da96]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7ff51e2860b3]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4d3e) [0x564481b4dd3e]

[END_BACKTRACE]

[FILE]: src/core/pose/chains_util.cc
[LINE]: 496
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: Chain '1' is not directly built by any jump.



[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.36+release.57ac713
[COMMIT_DATE]: 2021-09-12T14:23:57.882909
[APPLICATION]: /home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease
[MODE]: Release
[EXTRAS]: mpi (OpenMPI 3.1.6) 
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in -in:path:database=/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/database/ -in:file -in:file:s=3PBL_A.pdb ETQ.pdb -in:file:extra_res_fa=ETQ.params -out:overwrite -out:nstruct=5 -parser -parser:protocol=dock.xml -packing -packing:ignore_ligand_chi -packing:no_optH=false -packing:flip_HNQ -packing:ex1 -packing:ex2 -mistakes -mistakes:restore_pre_talaris_2013_behavior

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7ff51e9d82aa]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7ff51e9220b3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::UtilityExitException::UtilityExitException(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x113) [0x7ff51e9dd0e3]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libutility.so(utility::exit(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)+0x3b) [0x7ff51e9dceab]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libcore.3.so(core::pose::get_jump_id_from_chain_id(unsigned long const&, core::pose::Pose const&)+0x2bf) [0x7ff516c3716f]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols_h.5.so(protocols::ligand_docking::Transform::apply(core::pose::Pose&)+0xc2) [0x7ff51d0a8e82]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x268) [0x7ff51f937558]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x21) [0x7ff51f937a51]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x40) [0x7ff51f938270]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x2be) [0x7ff51f93c7fe]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7ff51fad75d4]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7ff51fad8b48]
/home/zhengjishen/Desktop/rosetta.binary.linux.release-296/main/source/build/src/release/linux/5.13/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7ff51fac01b7]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4a96) [0x564481b4da96]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7ff51e2860b3]
/home/zhengjishen/Desktop/rosetta_workshop/rosetta/main/source/bin/rosetta_scripts.mpi.linuxgccrelease(+0x4d3e) [0x564481b4dd3e]

[END_BACKTRACE]

[FILE]: src/core/pose/chains_util.cc
[LINE]: 496
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: Chain '1' is not directly built by any jump.



[END_MESSAGE]
[END_CRASH_REPORT]