##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
[COMMIT_DATE]: 2021-04-20T20:57:38.289184
[APPLICATION]: /home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in:path:database=/home/tonycheng/rosetta/main/database/ -in:file:s=2erj_BCD1.pdb -out:overwrite -run:chain=D -remodel:blueprint=2erj_BCD_blueprint1

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f8d660c9e6a]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7f8d66102503]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::onError(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)+0xba) [0x7f8d62ad033a]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::ResfileContents::locate_resid(core::pose::Pose const&, char, unsigned long, char, unsigned long) const+0x1c8) [0x7f8d62ad45b8]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::ResfileContents::parse_body_line(core::pose::Pose const&, utility::vector1<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::map<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::shared_ptr<core::pack::task::ResfileCommand>, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::shared_ptr<core::pack::task::ResfileCommand> > > > const&, unsigned long, utility::vector1<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > >, std::allocator<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > > > >&, utility::vector1<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > >, std::allocator<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > > > >&)+0x5f9) [0x7f8d62ad4e89]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::ResfileContents::ResfileContents(core::pose::Pose const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::istream&)+0xc6d) [0x7f8d62ad7a3d]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::parse_resfile_string(core::pose::Pose const&, core::pack::task::PackerTask&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, utility::vector1<bool, std::allocator<bool> > const&)+0x205) [0x7f8d62ad8db5]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::parse_resfile_string(core::pose::Pose const&, core::pack::task::PackerTask&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x89) [0x7f8d62ad96f9]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelWorkingSet::manualPackerTaskGen(core::pose::Pose const&, protocols::forge::remodel::RemodelData const&)+0x135) [0x7f8d6aba9ea5]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelDesignMover::apply(core::pose::Pose&)+0x3fd) [0x7f8d6ab427dd]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelMover::apply(core::pose::Pose&)+0x8557) [0x7f8d6aba2007]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7f8d6a1da444]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7f8d6a1db9b8]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7f8d6a1c2cb7]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xe1e3) [0x565214df91e3]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xca90) [0x565214df7a90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7f8d65b1f0b3]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xcd5e) [0x565214df7d5e]

[END_BACKTRACE]

[FILE]: src/core/pack/task/ResfileReader.cc
[LINE]: 1577
[START_MESSAGE]
On line 3, the pose does not have residue with chain=D, PDBnum=1.

[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
[COMMIT_DATE]: 2021-04-20T20:57:38.289184
[APPLICATION]: /home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in:path:database=/home/tonycheng/rosetta/main/database/ -in:file:s=2erj_BCD2.pdb -out:overwrite -run:chain=D -remodel:blueprint=2erj_BCD_blueprint2

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f67fbdbfe6a]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7f67fbdf8503]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::onError(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)+0xba) [0x7f67f87c633a]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::ResfileContents::locate_resid(core::pose::Pose const&, char, unsigned long, char, unsigned long) const+0x1c8) [0x7f67f87ca5b8]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::ResfileContents::parse_body_line(core::pose::Pose const&, utility::vector1<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::map<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::shared_ptr<core::pack::task::ResfileCommand>, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::shared_ptr<core::pack::task::ResfileCommand> > > > const&, unsigned long, utility::vector1<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > >, std::allocator<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > > > >&, utility::vector1<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > >, std::allocator<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > > > >&)+0x5f9) [0x7f67f87cae89]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::ResfileContents::ResfileContents(core::pose::Pose const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::istream&)+0xc6d) [0x7f67f87cda3d]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::parse_resfile_string(core::pose::Pose const&, core::pack::task::PackerTask&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, utility::vector1<bool, std::allocator<bool> > const&)+0x205) [0x7f67f87cedb5]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::parse_resfile_string(core::pose::Pose const&, core::pack::task::PackerTask&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x89) [0x7f67f87cf6f9]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelWorkingSet::manualPackerTaskGen(core::pose::Pose const&, protocols::forge::remodel::RemodelData const&)+0x135) [0x7f680089fea5]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelDesignMover::apply(core::pose::Pose&)+0x3fd) [0x7f68008387dd]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelMover::apply(core::pose::Pose&)+0x8557) [0x7f6800898007]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7f67ffed0444]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7f67ffed19b8]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7f67ffeb8cb7]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xe1e3) [0x557cd8a291e3]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xca90) [0x557cd8a27a90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7f67fb8150b3]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xcd5e) [0x557cd8a27d5e]

[END_BACKTRACE]

[FILE]: src/core/pack/task/ResfileReader.cc
[LINE]: 1577
[START_MESSAGE]
On line 3, the pose does not have residue with chain=D, PDBnum=1.

[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
[COMMIT_DATE]: 2021-04-20T20:57:38.289184
[APPLICATION]: /home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in:path:database=/home/tonycheng/rosetta/main/database/ -in:file:s=2erj_BCD2.pdb -out:overwrite -run:chain=D -remodel:blueprint=2erj_BCD_blueprint2

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f42cd203e6a]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7f42cd23c503]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::onError(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)+0xba) [0x7f42c9c0a33a]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::ResfileContents::locate_resid(core::pose::Pose const&, char, unsigned long, char, unsigned long) const+0x1c8) [0x7f42c9c0e5b8]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::ResfileContents::parse_body_line(core::pose::Pose const&, utility::vector1<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::map<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::shared_ptr<core::pack::task::ResfileCommand>, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::shared_ptr<core::pack::task::ResfileCommand> > > > const&, unsigned long, utility::vector1<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > >, std::allocator<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > > > >&, utility::vector1<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > >, std::allocator<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > > > >&)+0x5f9) [0x7f42c9c0ee89]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::ResfileContents::ResfileContents(core::pose::Pose const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::istream&)+0xc6d) [0x7f42c9c11a3d]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::parse_resfile_string(core::pose::Pose const&, core::pack::task::PackerTask&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, utility::vector1<bool, std::allocator<bool> > const&)+0x205) [0x7f42c9c12db5]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::parse_resfile_string(core::pose::Pose const&, core::pack::task::PackerTask&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x89) [0x7f42c9c136f9]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelWorkingSet::manualPackerTaskGen(core::pose::Pose const&, protocols::forge::remodel::RemodelData const&)+0x135) [0x7f42d1ce3ea5]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelDesignMover::apply(core::pose::Pose&)+0x3fd) [0x7f42d1c7c7dd]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelMover::apply(core::pose::Pose&)+0x8557) [0x7f42d1cdc007]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7f42d1314444]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7f42d13159b8]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7f42d12fccb7]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xe1e3) [0x558bb91841e3]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xca90) [0x558bb9182a90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7f42ccc590b3]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xcd5e) [0x558bb9182d5e]

[END_BACKTRACE]

[FILE]: src/core/pack/task/ResfileReader.cc
[LINE]: 1577
[START_MESSAGE]
On line 3, the pose does not have residue with chain=D, PDBnum=2.

[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
[COMMIT_DATE]: 2021-04-20T20:57:38.289184
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
NO OPTIONS SPECIFIED

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f5557990e6a]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7f55579c9503]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(+0x1a27cc) [0x7f55579837cc]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x12a) [0x7f5557ac621a]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x13b) [0x7f5557ac832b]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x17d) [0x7f5557ac8ced]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.6.so(core::init::init_options(int, char**)+0x24) [0x7f555b46fdc4]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.6.so(core::init::init(int, char**)+0x2b) [0x7f555b47426b]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xca89) [0x55a57f9e5a89]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7f55573e60b3]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xcd5e) [0x55a57f9e5d5e]

[END_BACKTRACE]

[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1468
[START_MESSAGE]
Option matching -rund:chain not found in command line top-level context
Did you mean:
	 -enzdes:chi_min
	 -intf:chains
	 -run:chain


[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
[COMMIT_DATE]: 2021-04-20T20:57:38.289184
[APPLICATION]: /home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version "9.3.0"
[STDLIB]: libstdc++ version 20200808
[START_OPTIONS]
 -in:path:database=/home/tonycheng/rosetta/main/database/ -in:file:s=2erj_BCD6.pdb -out:overwrite -run:chain=D -remodel:blueprint=2erj_BCD_blueprint6

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f21e9b89e6a]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x103) [0x7f21e9bc2503]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::onError(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)+0xba) [0x7f21e659033a]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::ResfileContents::locate_resid(core::pose::Pose const&, char, unsigned long, char, unsigned long) const+0x1c8) [0x7f21e65945b8]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::ResfileContents::parse_body_line(core::pose::Pose const&, utility::vector1<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::map<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::shared_ptr<core::pack::task::ResfileCommand>, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::shared_ptr<core::pack::task::ResfileCommand> > > > const&, unsigned long, utility::vector1<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > >, std::allocator<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > > > >&, utility::vector1<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > >, std::allocator<std::__cxx11::list<std::shared_ptr<core::pack::task::ResfileCommand>, std::allocator<std::shared_ptr<core::pack::task::ResfileCommand> > > > >&)+0x5f9) [0x7f21e6594e89]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::ResfileContents::ResfileContents(core::pose::Pose const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::istream&)+0xc6d) [0x7f21e6597a3d]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::parse_resfile_string(core::pose::Pose const&, core::pack::task::PackerTask&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, utility::vector1<bool, std::allocator<bool> > const&)+0x205) [0x7f21e6598db5]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.5.so(core::pack::task::parse_resfile_string(core::pose::Pose const&, core::pack::task::PackerTask&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x89) [0x7f21e65996f9]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelWorkingSet::manualPackerTaskGen(core::pose::Pose const&, protocols::forge::remodel::RemodelData const&)+0x135) [0x7f21ee669ea5]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelDesignMover::apply(core::pose::Pose&)+0x3fd) [0x7f21ee6027dd]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols_b.5.so(protocols::forge::remodel::RemodelMover::apply(core::pose::Pose&)+0x8557) [0x7f21ee662007]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x22b4) [0x7f21edc9a444]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x238) [0x7f21edc9b9b8]
/home/tonycheng/rosetta/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x57) [0x7f21edc82cb7]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xe1e3) [0x555d50ec51e3]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xca90) [0x555d50ec3a90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7f21e95df0b3]
/home/tonycheng/rosetta/main/source/bin/remodel.linuxgccrelease(+0xcd5e) [0x555d50ec3d5e]

[END_BACKTRACE]

[FILE]: src/core/pack/task/ResfileReader.cc
[LINE]: 1577
[START_MESSAGE]
On line 3, the pose does not have residue with chain=D, PDBnum=1.

[END_MESSAGE]
[END_CRASH_REPORT]