##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
[COMMIT_DATE]: 2021-04-20T20:57:38.289184
[APPLICATION]: score.linuxgccrelease
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version "9.4.0"
[STDLIB]: libstdc++ version 20210601
[START_OPTIONS]
 -in:file:s=pet_10_maestro.pdb -in:file:extra_res_fa=params/PET.params -in:file:extra_patch_fa=patches/upper_terminus_pet.txt patches/lower_terminus_pet.txt

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(utility::save_crash_report(char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)+0x38) [0x7f3329be2468]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libutility.so(utility::signal_handler(int)+0xe8) [0x7f3329be25a8]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090) [0x7f3329625090]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.2.so(core::chemical::clean_up_dangling_connect(core::chemical::MutableResidueType&, core::chemical::ICoordAtomIDType)+0x18c) [0x7f332a739e2c]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.2.so(core::chemical::SetPolymerConnectAtom::apply(core::chemical::MutableResidueType&) const+0x2ed) [0x7f332a7d733d]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.2.so(core::chemical::PatchCase::apply(core::chemical::MutableResidueType const&, bool) const+0xd5) [0x7f332a7c41f5]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.2.so(core::chemical::Patch::apply(core::chemical::MutableResidueType const&, bool) const+0x3fc) [0x7f332a7c4a6c]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.2.so(core::chemical::Patch::apply(core::chemical::ResidueType const&, bool) const+0x85) [0x7f332a7cf315]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.2.so(core::chemical::ResidueTypeSet::apply_patch(std::shared_ptr<core::chemical::ResidueType const> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::map<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, utility::vector1<std::shared_ptr<core::chemical::Patch const>, std::allocator<std::shared_ptr<core::chemical::Patch const> > >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, utility::vector1<std::shared_ptr<core::chemical::Patch const>, std::allocator<std::shared_ptr<core::chemical::Patch const> > > > > > const&, std::map<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::shared_ptr<core::chemical::Metapatch const>, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::shared_ptr<core::chemical::Metapatch const> > > > const&) const+0x6b0) [0x7f332a8c6550]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.2.so(core::chemical::ResidueTypeSet::generate_residue_type_write_locked(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const+0x1fb) [0x7f332a8c6abb]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.2.so(core::chemical::ResidueTypeSet::name_mapOP_write_locked(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const+0x44) [0x7f332a8bfa14]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.2.so(core::chemical::ResidueTypeSet::name_mapOP(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const+0x7f) [0x7f332a8c060f]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.2.so(core::chemical::ResidueTypeFinder::apply_patches_recursively(utility::vector1<std::shared_ptr<core::chemical::ResidueType const>, std::allocator<std::shared_ptr<core::chemical::ResidueType const> > > const&, unsigned long, bool) const+0x917) [0x7f332a8b5de7]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.2.so(core::chemical::ResidueTypeFinder::get_representative_type(bool) const+0xc3) [0x7f332a8b9243]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.2.so(core::chemical::ResidueTypeSet::get_residue_type_with_variant_added(core::chemical::ResidueType const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const+0x117) [0x7f332a8cf767]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.3.so(core::io::pose_from_sfr::PoseFromSFRBuilder::pass_4_redo_termini()+0x4e4) [0x7f332b7a6704]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.3.so(core::io::pose_from_sfr::PoseFromSFRBuilder::build_pose(core::io::StructFileRep const&, core::pose::Pose&)+0xec) [0x7f332b7b579c]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.6.so(core::import_pose::build_pose_as_is(std::shared_ptr<core::io::StructFileRep>, core::pose::Pose&, core::chemical::ResidueTypeSet const&, core::import_pose::ImportPoseOptions const&)+0xf1) [0x7f332d59d381]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.6.so(core::import_pose::build_pose(std::shared_ptr<core::io::StructFileRep>, core::pose::Pose&, core::chemical::ResidueTypeSet const&, core::import_pose::ImportPoseOptions const&)+0x8c) [0x7f332d59e7cc]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.6.so(core::import_pose::pose_from_file(core::pose::Pose&, core::chemical::ResidueTypeSet const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, core::import_pose::ImportPoseOptions const&, bool, core::import_pose::FileType)+0x875) [0x7f332d5a0d65]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.6.so(core::import_pose::pose_from_file(core::pose::Pose&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, core::import_pose::ImportPoseOptions const&, bool, core::import_pose::FileType)+0x11d) [0x7f332d5a694d]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libcore.6.so(core::import_pose::pose_from_file(core::pose::Pose&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool, core::import_pose::FileType)+0x50) [0x7f332d5a6b50]
/home/martin/Programs/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/5.13/64/x86/gcc/9/default/libprotocols.1.so(protocols::jobdist::universal_main(protocols::moves::Mover&, float)+0x5152) [0x7f332e0391f2]
score.linuxgccrelease(+0xefa9) [0x557e00031fa9]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7f3329606083]
score.linuxgccrelease(+0xfb4e) [0x557e00032b4e]

[END_BACKTRACE]

[FILE]: SIGSEGV
[LINE]: 11
[START_MESSAGE]
Segmentation Fault

[END_MESSAGE]
[END_CRASH_REPORT]