##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
[COMMIT_DATE]: 2021-04-20T20:57:38.289184
[APPLICATION]: minirosetta.linuxgccrelease
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version "8.3.0"
[STDLIB]: libstdc++ version 20190222
[START_OPTIONS]
 -in:file:fullatom -in:file:fasta=./t000_.fasta -in:file:alignment=./aligned.aln -in:file:psipred_ss2=./t000_.psipred_ss2 -in:file:template_pdb=./4f3la_clean.pdb -out:overwrite -out:nstruct=20 -out:file:scorefile=./threaded_model.fasc -out:file:silent=./threaded_model.out -out:file:fullatom -run:protocol=threading -loops:frag_sizes=9 3 1 -loops:frag_files=./aat000_09_05.200_v1_3.gz ./aat000_03_05.200_v1_3.gz none -loops:build_initial -loops:extended -loops:remodel=quick_ccd -loops:relax=fastrelax -cm:aln_format=general

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/scratch/pub/libs/rosetta/3.13/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/default/libutility.so(utility::save_crash_report(char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)+0x23) [0x7f5775966e63]
/scratch/pub/libs/rosetta/3.13/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/default/libutility.so(utility::signal_handler(int)+0xd4) [0x7f5775966f74]
/lib64/libc.so.6(+0x36400) [0x7f5772702400]
/scratch/pub/libs/rosetta/3.13/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/default/libcore.3.so(core::pose::Pose::operator=(core::pose::Pose const&)+0xc2) [0x7f5777f7bcb2]
/scratch/pub/libs/rosetta/3.13/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/default/libcore.3.so(core::pose::Pose::Pose(core::pose::Pose const&)+0x233) [0x7f5777f7c653]
/scratch/pub/libs/rosetta/3.13/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/default/libprotocols_g.5.so(protocols::comparative_modeling::ThreadingMover::ThreadingMover(core::sequence::SequenceAlignment const&, core::pose::Pose const&)+0x94) [0x7f5781329164]
/scratch/pub/libs/rosetta/3.13/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/default/libprotocols_g.5.so(protocols::comparative_modeling::ThreadingJobInputter::pose_from_job(core::pose::Pose&, std::shared_ptr<protocols::jd2::Job>)+0x490) [0x7f578131e110]
/scratch/pub/libs/rosetta/3.13/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/default/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool)+0x19d2) [0x7f577bf28112]
/scratch/pub/libs/rosetta/3.13/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/default/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0x14e) [0x7f577bf28b0e]
/scratch/pub/libs/rosetta/3.13/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/default/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x47) [0x7f577bf11827]
/scratch/pub/libs/rosetta/3.13/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/default/libprotocols_g.5.so(protocols::comparative_modeling::cm_main()+0x126) [0x7f57812ecda6]
minirosetta.linuxgccrelease() [0x405281]
/lib64/libc.so.6(__libc_start_main+0xf5) [0x7f57726ee555]
minirosetta.linuxgccrelease() [0x40580a]

[END_BACKTRACE]

[FILE]: SIGSEGV
[LINE]: 11
[START_MESSAGE]
Segmentation Fault

[END_MESSAGE]
[END_CRASH_REPORT]