##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
[COMMIT_DATE]: 2021-04-20T20:57:38.289184
[APPLICATION]: rosetta_scripts.hdf5.linuxgccrelease
[MODE]: Release
[EXTRAS]: hdf5 
[OS]: GNU/Linux
[COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-44)"
[STDLIB]: libstdc++ version 20150623
[START_OPTIONS]
 -in:file:keep_input_scores=false -in:file:silent=/home/dengxj/RIFdock/1P9M-SIL6-R/site1/pilot_splits/xaa.silent -in:file:silent_read_through_errors -out:mute=protocols.rosetta_scripts.ParsedProtocol.REPORT -out:file:silent=out.silent -out:file:silent_struct_type=binary -parser:protocol=/home/dengxj/RIFdock/supplemental_files/cao_2021_protocol/paper_interface_design.xml -parser:script_vars=CAO_2021_PROTOCOL=/home/dengxj/RIFdock/supplemental_files/cao_2021_protocol patchdock_res=131,132,181 runpsipred_single=/home/dengxj/software/psipred/runpsipred_single -corrections:beta_nov16 -holes:dalphaball=/opt/software/rosetta_src_2021.16.61629_bundle/main/source/external/DAlpahBall -indexed_structure_store:fragment_store=/home/dengxj/ss_grouped_vall_all/ss_grouped_vall_all.h5

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libutility.so(backtrace_string(int)+0x3a) [0x7fbdef4368ca]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libutility.so(utility::excn::Exception::Exception(char const*, int, std::string const&)+0x51) [0x7fbdef435e51]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libutility.so(utility::exit(char const*, int, std::string const&, int)+0xa5) [0x7fbdef4d8dc5]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.3.so(core::scoring::packing::get_surf_vol(core::pose::Pose const&, core::id::AtomID_Map<bool> const&, double)+0x590) [0x7fbdf2a1a8d0]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::sap_atom_sasa(core::pose::Pose const&, utility::vector1<bool, std::allocator<bool> > const&)+0xc15) [0x7fbdf3fd5705]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapDatabase::generate_max_sasa()+0x1034) [0x7fbdf3fca4d4]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapDatabase::SapDatabase()+0x109) [0x7fbdf3fcb529]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapConstraintHelper::init()+0x25f) [0x7fbdf3fad63f]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapConstraintHelper::SapConstraintHelper(std::shared_ptr<core::pack::guidance_scoreterms::sap::SapConstraintOptions const> const&)+0x942) [0x7fbdf3fae132]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::common_setup(std::shared_ptr<core::pack::guidance_scoreterms::sap::SapConstraintOptions> const&, core::pose::Pose const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, utility::vector1<std::shared_ptr<core::conformation::Residue const>, std::allocator<std::shared_ptr<core::conformation::Residue const> > >&)+0xe8) [0x7fbdf3fdab18]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::calculate_sap(core::pose::Pose const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&)+0xd2) [0x7fbdf3fdae42]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapScoreMetric::calculate(core::pose::Pose const&) const+0xa2) [0x7fbdf3fcc9d2]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.3.so(core::simple_metrics::RealMetric::apply(std::string const&, core::pose::Pose&, bool) const+0x22) [0x7fbdf29bd5d2]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_metrics(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x82) [0x7fbdf529f132]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x5a) [0x7fbdf52a0dda]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x3d) [0x7fbdf52a17cd]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x1ff) [0x7fbdf52a22bf]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::string&, std::string&, unsigned long&, unsigned long&, bool)+0xc52) [0x7fbdf53ca452]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0xc1) [0x7fbdf53cc171]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x4a) [0x7fbdf53baaea]
rosetta_scripts.hdf5.linuxgccrelease() [0x403cee]
/lib64/libc.so.6(__libc_start_main+0xf5) [0x7fbdebbfc555]
rosetta_scripts.hdf5.linuxgccrelease() [0x4040e4]

[END_BACKTRACE]

[FILE]: src/core/scoring/packing/surf_vol.cc
[LINE]: 170
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: 



[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
[COMMIT_DATE]: 2021-04-20T20:57:38.289184
[APPLICATION]: rosetta_scripts.hdf5.linuxgccrelease
[MODE]: Release
[EXTRAS]: hdf5 
[OS]: GNU/Linux
[COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-44)"
[STDLIB]: libstdc++ version 20150623
[START_OPTIONS]
 -in:file:keep_input_scores=false -in:file:silent=/home/dengxj/RIFdock/1P9M-SIL6-R/site1/pilot_splits/xaa.silent -in:file:silent_read_through_errors -out:mute=protocols.rosetta_scripts.ParsedProtocol.REPORT -out:file:silent=out.silent -out:file:silent_struct_type=binary -parser:protocol=/home/dengxj/RIFdock/supplemental_files/cao_2021_protocol/paper_interface_design.xml -parser:script_vars=CAO_2021_PROTOCOL=/home/dengxj/RIFdock/supplemental_files/cao_2021_protocol patchdock_res=131,132,181 runpsipred_single=/home/dengxj/software/psipred/runpsipred_single -corrections:beta_nov16 -holes:dalphaball=/opt/software/rosetta_src_2021.16.61629_bundle/main/source/external/DAlpahBall -indexed_structure_store:fragment_store=/home/dengxj/ss_grouped_vall_all/ss_grouped_vall_all.h5

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libutility.so(backtrace_string(int)+0x3a) [0x7fbdef4368ca]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libutility.so(utility::excn::Exception::Exception(char const*, int, std::string const&)+0x51) [0x7fbdef435e51]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libutility.so(utility::exit(char const*, int, std::string const&, int)+0xa5) [0x7fbdef4d8dc5]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.3.so(core::scoring::packing::get_surf_vol(core::pose::Pose const&, core::id::AtomID_Map<bool> const&, double)+0x590) [0x7fbdf2a1a8d0]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::sap_atom_sasa(core::pose::Pose const&, utility::vector1<bool, std::allocator<bool> > const&)+0xc15) [0x7fbdf3fd5705]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapDatabase::generate_max_sasa()+0x1034) [0x7fbdf3fca4d4]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapDatabase::SapDatabase()+0x109) [0x7fbdf3fcb529]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapConstraintHelper::init()+0x25f) [0x7fbdf3fad63f]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapConstraintHelper::SapConstraintHelper(std::shared_ptr<core::pack::guidance_scoreterms::sap::SapConstraintOptions const> const&)+0x942) [0x7fbdf3fae132]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::common_setup(std::shared_ptr<core::pack::guidance_scoreterms::sap::SapConstraintOptions> const&, core::pose::Pose const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, utility::vector1<std::shared_ptr<core::conformation::Residue const>, std::allocator<std::shared_ptr<core::conformation::Residue const> > >&)+0xe8) [0x7fbdf3fdab18]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::calculate_sap(core::pose::Pose const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&)+0xd2) [0x7fbdf3fdae42]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapScoreMetric::calculate(core::pose::Pose const&) const+0xa2) [0x7fbdf3fcc9d2]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.3.so(core::simple_metrics::RealMetric::apply(std::string const&, core::pose::Pose&, bool) const+0x22) [0x7fbdf29bd5d2]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_metrics(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x82) [0x7fbdf529f132]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x5a) [0x7fbdf52a0dda]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x3d) [0x7fbdf52a17cd]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x1ff) [0x7fbdf52a22bf]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::string&, std::string&, unsigned long&, unsigned long&, bool)+0xc52) [0x7fbdf53ca452]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0xc1) [0x7fbdf53cc171]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x4a) [0x7fbdf53baaea]
rosetta_scripts.hdf5.linuxgccrelease() [0x403cee]
/lib64/libc.so.6(__libc_start_main+0xf5) [0x7fbdebbfc555]
rosetta_scripts.hdf5.linuxgccrelease() [0x4040e4]

[END_BACKTRACE]

[FILE]: src/core/scoring/packing/surf_vol.cc
[LINE]: 170
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: 



[END_MESSAGE]
[END_CRASH_REPORT]

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
[COMMIT_DATE]: 2021-04-20T20:57:38.289184
[APPLICATION]: rosetta_scripts.hdf5.linuxgccrelease
[MODE]: Release
[EXTRAS]: hdf5 
[OS]: GNU/Linux
[COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-44)"
[STDLIB]: libstdc++ version 20150623
[START_OPTIONS]
 -in:file:keep_input_scores=false -in:file:silent=/home/dengxj/RIFdock/1P9M-SIL6-R/site1/pilot_splits/xaa.silent -in:file:silent_read_through_errors -out:mute=protocols.rosetta_scripts.ParsedProtocol.REPORT -out:file:silent=out.silent -out:file:silent_struct_type=binary -parser:protocol=/home/dengxj/RIFdock/supplemental_files/cao_2021_protocol/paper_interface_design.xml -parser:script_vars=CAO_2021_PROTOCOL=/home/dengxj/RIFdock/supplemental_files/cao_2021_protocol patchdock_res=131,132,181 runpsipred_single=/home/dengxj/software/psipred/runpsipred_single -corrections:beta_nov16 -holes:dalphaball=/opt/software/rosetta_src_2021.16.61629_bundle/main/source/external/DAlpahBall -indexed_structure_store:fragment_store=/home/dengxj/ss_grouped_vall_all/ss_grouped_vall_all.h5

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libutility.so(backtrace_string(int)+0x3a) [0x7fbdef4368ca]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libutility.so(utility::excn::Exception::Exception(char const*, int, std::string const&)+0x51) [0x7fbdef435e51]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libutility.so(utility::exit(char const*, int, std::string const&, int)+0xa5) [0x7fbdef4d8dc5]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.3.so(core::scoring::packing::get_surf_vol(core::pose::Pose const&, core::id::AtomID_Map<bool> const&, double)+0x590) [0x7fbdf2a1a8d0]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::sap_atom_sasa(core::pose::Pose const&, utility::vector1<bool, std::allocator<bool> > const&)+0xc15) [0x7fbdf3fd5705]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapDatabase::generate_max_sasa()+0x1034) [0x7fbdf3fca4d4]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapDatabase::SapDatabase()+0x109) [0x7fbdf3fcb529]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapConstraintHelper::init()+0x25f) [0x7fbdf3fad63f]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapConstraintHelper::SapConstraintHelper(std::shared_ptr<core::pack::guidance_scoreterms::sap::SapConstraintOptions const> const&)+0x942) [0x7fbdf3fae132]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::common_setup(std::shared_ptr<core::pack::guidance_scoreterms::sap::SapConstraintOptions> const&, core::pose::Pose const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, utility::vector1<std::shared_ptr<core::conformation::Residue const>, std::allocator<std::shared_ptr<core::conformation::Residue const> > >&)+0xe8) [0x7fbdf3fdab18]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::calculate_sap(core::pose::Pose const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&, std::shared_ptr<core::select::residue_selector::ResidueSelector const> const&)+0xd2) [0x7fbdf3fdae42]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.5.so(core::pack::guidance_scoreterms::sap::SapScoreMetric::calculate(core::pose::Pose const&) const+0xa2) [0x7fbdf3fcc9d2]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libcore.3.so(core::simple_metrics::RealMetric::apply(std::string const&, core::pose::Pose&, bool) const+0x22) [0x7fbdf29bd5d2]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_metrics(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x82) [0x7fbdf529f132]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x5a) [0x7fbdf52a0dda]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >)+0x3d) [0x7fbdf52a17cd]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x1ff) [0x7fbdf52a22bf]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::string&, std::string&, unsigned long&, unsigned long&, bool)+0xc52) [0x7fbdf53ca452]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0xc1) [0x7fbdf53cc171]
/home/dengxj/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/hdf5/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0x4a) [0x7fbdf53baaea]
rosetta_scripts.hdf5.linuxgccrelease() [0x403cee]
/lib64/libc.so.6(__libc_start_main+0xf5) [0x7fbdebbfc555]
rosetta_scripts.hdf5.linuxgccrelease() [0x4040e4]

[END_BACKTRACE]

[FILE]: src/core/scoring/packing/surf_vol.cc
[LINE]: 170
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: 



[END_MESSAGE]
[END_CRASH_REPORT]