############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/bin/snugdock.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.1) [OS]: GNU/Linux [COMPILER]: GCC version "10.3.0" [STDLIB]: libstdc++ version 20210408 [START_OPTIONS] -in:file:s=snug_input.pdb -in:file:native=native_input.pdb -out:nstruct=2 -out:path:all=snug_output/ -packing:ex1 -packing:ex2aro -antibody:h3_loop_csts_hr -antibody:auto_generate_h3_kink_constraint -docking:partners=HL_A -docking:spin=false -docking:dock_pert=1 0 [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/mpi/libutility.so(backtrace_string[abi:cxx11](int)+0x43) [0x7f5269532723] /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0xce) [0x7f5269531c7e] /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/mpi/libutility.so(utility::UtilityExitException::UtilityExitException(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0xfb) [0x7f52695e53db] /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/mpi/libutility.so(utility::exit(char const*, int, std::__cxx11::basic_string, std::allocator > const&, int)+0x37) [0x7f52695e51c7] /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/mpi/libprotocols.7.so(core::conformation::Conformation::residue(unsigned long) const+0x9b) [0x7f5279d5c6cb] /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/mpi/libprotocols_h.5.so(protocols::docking::calc_Lrmsd(core::pose::Pose const&, core::pose::Pose const&, utility::vector1 >)+0x2ea) [0x7f5275ff012a] /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/mpi/libprotocols_h.5.so(protocols::docking::DockingProtocol::apply(core::pose::Pose&)+0xc2a) [0x7f5275fad53a] /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/mpi/libprotocols.7.so(protocols::antibody::snugdock::SnugDockProtocol::apply(core::pose::Pose&)+0x39d) [0x7f527a44cddd] /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr&, long, std::__cxx11::basic_string, std::allocator >&, std::__cxx11::basic_string, std::allocator >&, unsigned long&, unsigned long&, bool)+0x21b1) [0x7f527013c831] /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr)+0x218) [0x7f527013de58] /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/mpi/libprotocols.1.so(protocols::jd2::MPIWorkPoolJobDistributor::go(std::shared_ptr)+0x2d5) [0x7f527017a725] /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/bin/snugdock.mpi.linuxgccrelease() [0x401269] /lib64/libc.so.6(__libc_start_main+0xea) [0x7f5265c7001a] /share/home/qianlei/Softwares/rosetta_src_2021.16.61629_bundle/main/source/bin/snugdock.mpi.linuxgccrelease() [0x40132a] [END_BACKTRACE] [FILE]: src/core/conformation/Conformation.hh [LINE]: 510 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Error in core::conformation::Conformation::residue(): The sequence position requested was greater than the number of residues in the pose. [END_MESSAGE] [END_CRASH_REPORT]