############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.24+release.9fbc647 [COMMIT_DATE]: 2023-06-12T21:00:29.174178 [APPLICATION]: UNKNOWN APPLICATION [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: Clang version "14.0.0 " [STDLIB]: libstdc++ version 20220421 [START_OPTIONS] NO OPTIONS SPECIFIED [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(backtrace_string[abi:cxx11](int)+0x3d) [0x7fd51f45a9fd] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x125) [0x7fd51f4790e5] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0xc70) [0x7fd51f54fa20] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_option_file(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >&, bool)+0x408) [0x7fd51f54ace8] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_stream(std::istream&, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0x122b) [0x7fd51f549e4b] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_file_exception(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)+0x151) [0x7fd51f54b191] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string, std::allocator >, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, bool)+0x40f) [0x7fd51f5451bf] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x222) [0x7fd51f546412] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7fd522fe2299] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x2393) [0x7fd5298fe393] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7fd51e099d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7fd51e099e40] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x22a5) [0x7fd5298fe2a5] [END_BACKTRACE] [FILE]: src/utility/options/OptionCollection.cc [LINE]: 1467 [START_MESSAGE] Option matching -antibody:remodel not found in command line top-level context Did you mean: -loops:remodel -remodel [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.24+release.9fbc647 [COMMIT_DATE]: 2023-06-12T21:00:29.174178 [APPLICATION]: UNKNOWN APPLICATION [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: Clang version "14.0.0 " [STDLIB]: libstdc++ version 20220421 [START_OPTIONS] NO OPTIONS SPECIFIED [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(backtrace_string[abi:cxx11](int)+0x3d) [0x7fe8ffb7a9fd] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x125) [0x7fe8ffb990e5] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0xc70) [0x7fe8ffc6fa20] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_option_file(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >&, bool)+0x408) [0x7fe8ffc6ace8] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_stream(std::istream&, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0x122b) [0x7fe8ffc69e4b] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_file_exception(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)+0x151) [0x7fe8ffc6b191] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string, std::allocator >, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, bool)+0x40f) [0x7fe8ffc651bf] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x222) [0x7fe8ffc66412] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7fe903702299] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x2393) [0x7fe90a023393] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7fe8fe7b9d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7fe8fe7b9e40] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x22a5) [0x7fe90a0232a5] [END_BACKTRACE] [FILE]: src/utility/options/OptionCollection.cc [LINE]: 1467 [START_MESSAGE] Option matching -antibody:remodel not found in command line top-level context Did you mean: -loops:remodel -remodel [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.24+release.9fbc647 [COMMIT_DATE]: 2023-06-12T21:00:29.174178 [APPLICATION]: UNKNOWN APPLICATION [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: Clang version "14.0.0 " [STDLIB]: libstdc++ version 20220421 [START_OPTIONS] NO OPTIONS SPECIFIED [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(backtrace_string[abi:cxx11](int)+0x3d) [0x7f405f52a9fd] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x125) [0x7f405f5490e5] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0xc70) [0x7f405f61fa20] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_option_file(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >&, bool)+0x408) [0x7f405f61ace8] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_stream(std::istream&, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0x122b) [0x7f405f619e4b] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_file_exception(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)+0x151) [0x7f405f61b191] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string, std::allocator >, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, bool)+0x40f) [0x7f405f6151bf] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x222) [0x7f405f616412] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7f40630b2299] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x2393) [0x7f40699ce393] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f405e169d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f405e169e40] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x22a5) [0x7f40699ce2a5] [END_BACKTRACE] [FILE]: src/utility/options/OptionCollection.cc [LINE]: 1467 [START_MESSAGE] Option matching -antibody:remodel not found in command line top-level context Did you mean: -loops:remodel -remodel [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.24+release.9fbc647 [COMMIT_DATE]: 2023-06-12T21:00:29.174178 [APPLICATION]: UNKNOWN APPLICATION [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: Clang version "14.0.0 " [STDLIB]: libstdc++ version 20220421 [START_OPTIONS] NO OPTIONS SPECIFIED [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(backtrace_string[abi:cxx11](int)+0x3d) [0x7f89ac3ea9fd] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x125) [0x7f89ac4090e5] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0xc70) [0x7f89ac4dfa20] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_option_file(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >&, bool)+0x408) [0x7f89ac4dace8] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_stream(std::istream&, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0x122b) [0x7f89ac4d9e4b] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_file_exception(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)+0x151) [0x7f89ac4db191] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string, std::allocator >, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, bool)+0x40f) [0x7f89ac4d51bf] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x222) [0x7f89ac4d6412] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7f89aff72299] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x2393) [0x7f89b6891393] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f89ab029d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f89ab029e40] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x22a5) [0x7f89b68912a5] [END_BACKTRACE] [FILE]: src/utility/options/OptionCollection.cc [LINE]: 1467 [START_MESSAGE] Option matching -antibody:remodel not found in command line top-level context Did you mean: -loops:remodel -remodel [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.24+release.9fbc647 [COMMIT_DATE]: 2023-06-12T21:00:29.174178 [APPLICATION]: UNKNOWN APPLICATION [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: Clang version "14.0.0 " [STDLIB]: libstdc++ version 20220421 [START_OPTIONS] NO OPTIONS SPECIFIED [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(backtrace_string[abi:cxx11](int)+0x3d) [0x7f937338a9fd] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x125) [0x7f93733a90e5] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0xc70) [0x7f937347fa20] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_option_file(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >&, bool)+0x408) [0x7f937347ace8] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_stream(std::istream&, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0x122b) [0x7f9373479e4b] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_file_exception(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)+0x151) [0x7f937347b191] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string, std::allocator >, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, bool)+0x40f) [0x7f93734751bf] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x222) [0x7f9373476412] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7f9376f12299] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x2393) [0x7f937d830393] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f9371fc9d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f9371fc9e40] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x22a5) [0x7f937d8302a5] [END_BACKTRACE] [FILE]: src/utility/options/OptionCollection.cc [LINE]: 1467 [START_MESSAGE] Option matching -antibody:remodel not found in command line top-level context Did you mean: -loops:remodel -remodel [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.24+release.9fbc647 [COMMIT_DATE]: 2023-06-12T21:00:29.174178 [APPLICATION]: UNKNOWN APPLICATION [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: Clang version "14.0.0 " [STDLIB]: libstdc++ version 20220421 [START_OPTIONS] NO OPTIONS SPECIFIED [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(backtrace_string[abi:cxx11](int)+0x3d) [0x7fcd7edba9fd] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x125) [0x7fcd7edd90e5] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0xc70) [0x7fcd7eeafa20] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_option_file(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >&, bool)+0x408) [0x7fcd7eeaace8] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_stream(std::istream&, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0x122b) [0x7fcd7eea9e4b] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_file_exception(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)+0x151) [0x7fcd7eeab191] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string, std::allocator >, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, bool)+0x40f) [0x7fcd7eea51bf] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x222) [0x7fcd7eea6412] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7fcd82942299] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x2393) [0x7fcd89259393] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7fcd7d9f9d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7fcd7d9f9e40] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x22a5) [0x7fcd892592a5] [END_BACKTRACE] [FILE]: src/utility/options/OptionCollection.cc [LINE]: 1467 [START_MESSAGE] Option matching -antibody:remodel not found in command line top-level context Did you mean: -loops:remodel -remodel [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.24+release.9fbc647 [COMMIT_DATE]: 2023-06-12T21:00:29.174178 [APPLICATION]: UNKNOWN APPLICATION [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: Clang version "14.0.0 " [STDLIB]: libstdc++ version 20220421 [START_OPTIONS] NO OPTIONS SPECIFIED [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(backtrace_string[abi:cxx11](int)+0x3d) [0x7f0f2d2fa9fd] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x125) [0x7f0f2d3190e5] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0xc70) [0x7f0f2d3efa20] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_option_file(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >&, bool)+0x408) [0x7f0f2d3eace8] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_stream(std::istream&, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0x122b) [0x7f0f2d3e9e4b] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_file_exception(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)+0x151) [0x7f0f2d3eb191] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string, std::allocator >, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, bool)+0x40f) [0x7f0f2d3e51bf] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x222) [0x7f0f2d3e6412] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7f0f30e82299] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x2393) [0x7f0f3779c393] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f0f2bf39d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f0f2bf39e40] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x22a5) [0x7f0f3779c2a5] [END_BACKTRACE] [FILE]: src/utility/options/OptionCollection.cc [LINE]: 1467 [START_MESSAGE] Option matching -antibody:remodel not found in command line top-level context Did you mean: -loops:remodel -remodel [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.24+release.9fbc647 [COMMIT_DATE]: 2023-06-12T21:00:29.174178 [APPLICATION]: UNKNOWN APPLICATION [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: Clang version "14.0.0 " [STDLIB]: libstdc++ version 20220421 [START_OPTIONS] NO OPTIONS SPECIFIED [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(backtrace_string[abi:cxx11](int)+0x3d) [0x7fbbb997a9fd] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x125) [0x7fbbb99990e5] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0xc70) [0x7fbbb9a6fa20] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_option_file(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >&, bool)+0x408) [0x7fbbb9a6ace8] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_stream(std::istream&, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0x122b) [0x7fbbb9a69e4b] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_file_exception(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)+0x151) [0x7fbbb9a6b191] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string, std::allocator >, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, bool)+0x40f) [0x7fbbb9a651bf] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x222) [0x7fbbb9a66412] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7fbbbd502299] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x2393) [0x7fbbc3e23393] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7fbbb85b9d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7fbbb85b9e40] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x22a5) [0x7fbbc3e232a5] [END_BACKTRACE] [FILE]: src/utility/options/OptionCollection.cc [LINE]: 1467 [START_MESSAGE] Option matching -antibody:remodel not found in command line top-level context Did you mean: -loops:remodel -remodel [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.24+release.9fbc647 [COMMIT_DATE]: 2023-06-12T21:00:29.174178 [APPLICATION]: UNKNOWN APPLICATION [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: Clang version "14.0.0 " [STDLIB]: libstdc++ version 20220421 [START_OPTIONS] NO OPTIONS SPECIFIED [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(backtrace_string[abi:cxx11](int)+0x3d) [0x7f3cb279a9fd] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x125) [0x7f3cb27b90e5] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0xc70) [0x7f3cb288fa20] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_option_file(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >&, bool)+0x408) [0x7f3cb288ace8] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_stream(std::istream&, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0x122b) [0x7f3cb2889e4b] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_file_exception(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)+0x151) [0x7f3cb288b191] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string, std::allocator >, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, bool)+0x40f) [0x7f3cb28851bf] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x222) [0x7f3cb2886412] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7f3cb6322299] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x2393) [0x7f3cbcc35393] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f3cb13d9d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f3cb13d9e40] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x22a5) [0x7f3cbcc352a5] [END_BACKTRACE] [FILE]: src/utility/options/OptionCollection.cc [LINE]: 1467 [START_MESSAGE] Option matching -antibody:remodel not found in command line top-level context Did you mean: -loops:remodel -remodel [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.24+release.9fbc647 [COMMIT_DATE]: 2023-06-12T21:00:29.174178 [APPLICATION]: UNKNOWN APPLICATION [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: Clang version "14.0.0 " [STDLIB]: libstdc++ version 20220421 [START_OPTIONS] NO OPTIONS SPECIFIED [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(backtrace_string[abi:cxx11](int)+0x3d) [0x7f8af13aa9fd] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x125) [0x7f8af13c90e5] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0xc70) [0x7f8af149fa20] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_option_file(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >&, bool)+0x408) [0x7f8af149ace8] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_stream(std::istream&, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0x122b) [0x7f8af1499e4b] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_file_exception(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)+0x151) [0x7f8af149b191] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string, std::allocator >, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, bool)+0x40f) [0x7f8af14951bf] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x222) [0x7f8af1496412] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7f8af4f32299] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x2393) [0x7f8afb847393] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f8aeffe9d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f8aeffe9e40] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x22a5) [0x7f8afb8472a5] [END_BACKTRACE] [FILE]: src/utility/options/OptionCollection.cc [LINE]: 1467 [START_MESSAGE] Option matching -antibody:remodel not found in command line top-level context Did you mean: -loops:remodel -remodel [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.24+release.9fbc647 [COMMIT_DATE]: 2023-06-12T21:00:29.174178 [APPLICATION]: UNKNOWN APPLICATION [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: Clang version "14.0.0 " [STDLIB]: libstdc++ version 20220421 [START_OPTIONS] NO OPTIONS SPECIFIED [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(backtrace_string[abi:cxx11](int)+0x3d) [0x7f4eeec4a9fd] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x125) [0x7f4eeec690e5] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::find_key_cl(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0xc70) [0x7f4eeed3fa20] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_option_file(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >&, bool)+0x408) [0x7f4eeed3ace8] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_stream(std::istream&, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)+0x122b) [0x7f4eeed39e4b] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load_options_from_file_exception(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)+0x151) [0x7f4eeed3b191] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string, std::allocator >, std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >&, bool)+0x40f) [0x7f4eeed351bf] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x222) [0x7f4eeed36412] /home/user/Rosetta/main/source/build/src/release/linux/4.4/64/x86/clang/14.0/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7f4ef27d2299] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x2393) [0x7f4ef90e4393] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f4eed889d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f4eed889e40] /home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease(+0x22a5) [0x7f4ef90e42a5] [END_BACKTRACE] [FILE]: src/utility/options/OptionCollection.cc [LINE]: 1467 [START_MESSAGE] Option matching -antibody:remodel not found in command line top-level context Did you mean: -loops:remodel -remodel [END_MESSAGE] [END_CRASH_REPORT]