############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.21+HEAD.9b3660a8932 [COMMIT_DATE]: 2023-05-26T08:14:51 [APPLICATION]: docking_protocol [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "9.4.0" [STDLIB]: libstdc++ version 20210601 [START_OPTIONS] -in:detect_disulf -in:detect_disulf_tolerance=2 -in:file:native=native.pdb -in:file:silent=3.replica-dock-results/decoys_p_0004_traj.out -out:nstruct=1 -out:file:scorefile=refine_high_res.score -out:path:all=4.refine-output/ -run:rebuild_disulf -run:ignore_zero_occupancy=false -run:multiple_processes_writing_to_one_directory -packing:ex1 -packing:ex2aro -evaluation:DockMetrics -docking:partners=A_B -docking:docking_local_refine [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /usr/local/bin/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x1534da99760a] /usr/local/bin/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x103) [0x1534da9d08b3] /usr/local/bin/libutility.so(utility::UtilityExitException::UtilityExitException(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x113) [0x1534da99c673] /usr/local/bin/libutility.so(utility::exit(char const*, int, std::__cxx11::basic_string, std::allocator > const&, int)+0x3b) [0x1534da99c28b] /usr/local/bin/libcore.3.so(core::io::silent::SilentFileData::read_tags_fast(std::__cxx11::basic_string, std::allocator > const&, utility::vector1, std::allocator >, std::allocator, std::allocator > > >&) const+0x5f8) [0x1534cff4e748] /usr/local/bin/libcore.3.so(core::io::silent::SilentFileData::read_tags_fast(std::__cxx11::basic_string, std::allocator > const&) const+0x46) [0x1534cff4e816] /usr/local/bin/libcore.3.so(core::io::silent::SilentFileData::_read_file(std::__cxx11::basic_string, std::allocator > const&, bool)+0x6f) [0x1534cff5bb8f] /usr/local/bin/libcore.3.so(core::io::silent::SilentFileData::read_file(std::__cxx11::basic_string, std::allocator > const&)+0x45) [0x1534cff5c625] /usr/local/bin/libprotocols.1.so(protocols::jd2::SilentFileJobInputter::fill_jobs(protocols::jd2::JobsContainer&)+0xf60) [0x1534db82c990] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributor::get_job_list_from_job_inputter()+0x1a0) [0x1534db7c9830] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributor::init_jd()+0x188) [0x1534db7cb7f8] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributor::JobDistributor()+0xc3) [0x1534db7cbd03] /usr/local/bin/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::FileSystemJobDistributor()+0x3e) [0x1534db7bd1fe] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributorFactory::create_job_distributor()+0x28a) [0x1534db7d450a] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributor::get_instance()+0xf2) [0x1534db7c8182] docking_protocol(+0x3cb6) [0x564399fedcb6] docking_protocol(+0x3880) [0x564399fed880] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x1534da416083] docking_protocol(+0x39fe) [0x564399fed9fe] [END_BACKTRACE] [FILE]: src/core/io/silent/SilentFileData.cc [LINE]: 216 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: ERROR: Unable to open silent_input file: '3.replica-dock-results/decoys_p_0004_traj.out' [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.21+HEAD.9b3660a8932 [COMMIT_DATE]: 2023-05-26T08:14:51 [APPLICATION]: docking_protocol [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "9.4.0" [STDLIB]: libstdc++ version 20210601 [START_OPTIONS] -in:detect_disulf -in:detect_disulf_tolerance=2 -in:file:native=native.pdb -in:file:silent=3.replica-dock-results/decoys_p_0001_traj.out -out:nstruct=1 -out:file:scorefile=refine_high_res.score -out:path:all=4.refine-output/ -run:rebuild_disulf -run:ignore_zero_occupancy=false -run:multiple_processes_writing_to_one_directory -packing:ex1 -packing:ex2aro -evaluation:DockMetrics -docking:partners=A_B -docking:docking_local_refine [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /usr/local/bin/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x14a531e7e60a] /usr/local/bin/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x103) [0x14a531eb78b3] /usr/local/bin/libutility.so(utility::UtilityExitException::UtilityExitException(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x113) [0x14a531e83673] /usr/local/bin/libutility.so(utility::exit(char const*, int, std::__cxx11::basic_string, std::allocator > const&, int)+0x3b) [0x14a531e8328b] /usr/local/bin/libcore.3.so(core::io::silent::SilentFileData::read_tags_fast(std::__cxx11::basic_string, std::allocator > const&, utility::vector1, std::allocator >, std::allocator, std::allocator > > >&) const+0x5f8) [0x14a527435748] /usr/local/bin/libcore.3.so(core::io::silent::SilentFileData::read_tags_fast(std::__cxx11::basic_string, std::allocator > const&) const+0x46) [0x14a527435816] /usr/local/bin/libcore.3.so(core::io::silent::SilentFileData::_read_file(std::__cxx11::basic_string, std::allocator > const&, bool)+0x6f) [0x14a527442b8f] /usr/local/bin/libcore.3.so(core::io::silent::SilentFileData::read_file(std::__cxx11::basic_string, std::allocator > const&)+0x45) [0x14a527443625] /usr/local/bin/libprotocols.1.so(protocols::jd2::SilentFileJobInputter::fill_jobs(protocols::jd2::JobsContainer&)+0xf60) [0x14a532d13990] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributor::get_job_list_from_job_inputter()+0x1a0) [0x14a532cb0830] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributor::init_jd()+0x188) [0x14a532cb27f8] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributor::JobDistributor()+0xc3) [0x14a532cb2d03] /usr/local/bin/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::FileSystemJobDistributor()+0x3e) [0x14a532ca41fe] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributorFactory::create_job_distributor()+0x28a) [0x14a532cbb50a] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributor::get_instance()+0xf2) [0x14a532caf182] docking_protocol(+0x3cb6) [0x562f9e7afcb6] docking_protocol(+0x3880) [0x562f9e7af880] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x14a5318fd083] docking_protocol(+0x39fe) [0x562f9e7af9fe] [END_BACKTRACE] [FILE]: src/core/io/silent/SilentFileData.cc [LINE]: 216 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: ERROR: Unable to open silent_input file: '3.replica-dock-results/decoys_p_0001_traj.out' [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.21+HEAD.9b3660a8932 [COMMIT_DATE]: 2023-05-26T08:14:51 [APPLICATION]: docking_protocol [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "9.4.0" [STDLIB]: libstdc++ version 20210601 [START_OPTIONS] -in:detect_disulf -in:detect_disulf_tolerance=2 -in:file:native=native.pdb -in:file:silent=3.replica-dock-results/decoys_p_0002_traj.out -out:nstruct=1 -out:file:scorefile=refine_high_res.score -out:path:all=4.refine-output/ -run:rebuild_disulf -run:ignore_zero_occupancy=false -run:multiple_processes_writing_to_one_directory -packing:ex1 -packing:ex2aro -evaluation:DockMetrics -docking:partners=A_B -docking:docking_local_refine [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /usr/local/bin/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x150f9e2a860a] /usr/local/bin/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x103) [0x150f9e2e18b3] /usr/local/bin/libutility.so(utility::UtilityExitException::UtilityExitException(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x113) [0x150f9e2ad673] /usr/local/bin/libutility.so(utility::exit(char const*, int, std::__cxx11::basic_string, std::allocator > const&, int)+0x3b) [0x150f9e2ad28b] /usr/local/bin/libcore.3.so(core::io::silent::SilentFileData::read_tags_fast(std::__cxx11::basic_string, std::allocator > const&, utility::vector1, std::allocator >, std::allocator, std::allocator > > >&) const+0x5f8) [0x150f9385f748] /usr/local/bin/libcore.3.so(core::io::silent::SilentFileData::read_tags_fast(std::__cxx11::basic_string, std::allocator > const&) const+0x46) [0x150f9385f816] /usr/local/bin/libcore.3.so(core::io::silent::SilentFileData::_read_file(std::__cxx11::basic_string, std::allocator > const&, bool)+0x6f) [0x150f9386cb8f] /usr/local/bin/libcore.3.so(core::io::silent::SilentFileData::read_file(std::__cxx11::basic_string, std::allocator > const&)+0x45) [0x150f9386d625] /usr/local/bin/libprotocols.1.so(protocols::jd2::SilentFileJobInputter::fill_jobs(protocols::jd2::JobsContainer&)+0xf60) [0x150f9f13d990] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributor::get_job_list_from_job_inputter()+0x1a0) [0x150f9f0da830] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributor::init_jd()+0x188) [0x150f9f0dc7f8] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributor::JobDistributor()+0xc3) [0x150f9f0dcd03] /usr/local/bin/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::FileSystemJobDistributor()+0x3e) [0x150f9f0ce1fe] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributorFactory::create_job_distributor()+0x28a) [0x150f9f0e550a] /usr/local/bin/libprotocols.1.so(protocols::jd2::JobDistributor::get_instance()+0xf2) [0x150f9f0d9182] docking_protocol(+0x3cb6) [0x558057018cb6] docking_protocol(+0x3880) [0x558057018880] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x150f9dd27083] docking_protocol(+0x39fe) [0x5580570189fe] [END_BACKTRACE] [FILE]: src/core/io/silent/SilentFileData.cc [LINE]: 216 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: ERROR: Unable to open silent_input file: '3.replica-dock-results/decoys_p_0002_traj.out' [END_MESSAGE] [END_CRASH_REPORT]