############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.08+release.cb1caba [COMMIT_DATE]: 2020-02-21T14:46:08.581859 [APPLICATION]: stepwise.static.linuxgccrelease [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-16)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in:file:s=H0_minimize.pdb H1_minimize.pdb H2_minimize.pdb H3_minimize.pdb H4_minimize.pdb H5_minimize.pdb -in:file:native=2gdix_RNA.pdb -in:file:fasta=2gdix.fasta -in:file:input_res=1 2 3 4 5 76 77 78 79 80 6 7 8 9 39 40 41 42 12 13 14 27 28 29 16 17 18 24 25 26 48 49 50 71 72 73 54 55 56 57 64 65 66 67 -out:nstruct=10000 -out:file:silent=swm_2gdi_nores.out -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -constraints:cst_file=fade_0_50_cd10.cst -corrections:restore_talaris_behavior -rna:denovo:minimize_rna -stepwise:monte_carlo:cycles=10000 -full_model:motif_mode [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3af176f] [0x604b1b3] [0x60f1696] [0xfc3ba5] [0xfcd08a] [0x1085c2e] [0x1085e9f] [0x1087813] [0x10be7ef] [0x1090561] [0xfe1acd] [0xfd69e0] [0xfd6c77] [0xf6d8f7] [0xf6f843] [0x1065886] [0xf71672] [0xf76ca0] [0xf76fe1] [0xf446b9] [0xf452e2] [0x39e8e64] [0x3a22be1] [0x3a23765] [0x63543c] [0x6366f4] [0x412743] [0x65e6994] [0x63489d] [END_BACKTRACE] [FILE]: src/protocols/stepwise/modeler/align/StepWisePoseAligner.cc [LINE]: 179 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Assertion `superimpose_rmsd_ <= check_alignment_tolerance_` failed. [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.08+release.cb1caba [COMMIT_DATE]: 2020-02-21T14:46:08.581859 [APPLICATION]: stepwise.static.linuxgccrelease [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-16)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in:file:s=H0_minimize.pdb H1_minimize.pdb H2_minimize.pdb H3_minimize.pdb H4_minimize.pdb H5_minimize.pdb -in:file:native=2gdix_RNA.pdb -in:file:fasta=2gdix.fasta -in:file:input_res=1 2 3 4 5 76 77 78 79 80 6 7 8 9 39 40 41 42 12 13 14 27 28 29 16 17 18 24 25 26 48 49 50 71 72 73 54 55 56 57 64 65 66 67 -out:nstruct=10000 -out:file:silent=swm_2gdi_nores.out -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -constraints:cst_file=fade_0_50_cd10.cst -corrections:restore_talaris_behavior -rna:denovo:minimize_rna -stepwise:monte_carlo:cycles=10000 -full_model:motif_mode [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3af176f] [0x604b1b3] [0x60f1696] [0x51e0860] [0xf9ce81] [0xf9d948] [0xf76fa1] [0xf446b9] [0xf452e2] [0x39e8e64] [0x3a22be1] [0x3a23765] [0x63543c] [0x6366f4] [0x412743] [0x65e6994] [0x63489d] [END_BACKTRACE] [FILE]: src/core/pose/full_model_info/FullModelInfo.cc [LINE]: 372 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Assertion `idx == 0` failed. [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.08+release.cb1caba [COMMIT_DATE]: 2020-02-21T14:46:08.581859 [APPLICATION]: stepwise.static.linuxgccrelease [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-16)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in:file:s=H0_minimize.pdb H1_minimize.pdb H2_minimize.pdb H3_minimize.pdb H4_minimize.pdb H5_minimize.pdb -in:file:native=2gdix_RNA.pdb -in:file:fasta=2gdix.fasta -in:file:input_res=1 2 3 4 5 76 77 78 79 80 6 7 8 9 39 40 41 42 12 13 14 27 28 29 16 17 18 24 25 26 48 49 50 71 72 73 54 55 56 57 64 65 66 67 -out:nstruct=10000 -out:file:silent=swm_2gdi_nores.out -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -constraints:cst_file=fade_0_50_cd10.cst -corrections:restore_talaris_behavior -rna:denovo:minimize_rna -stepwise:monte_carlo:cycles=10000 -full_model:motif_mode [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3af176f] [0x604b1b3] [0x60f1696] [0x51e0860] [0xf9ce81] [0xf9d948] [0xf76fa1] [0xf446b9] [0xf452e2] [0x39e8e64] [0x3a22be1] [0x3a23765] [0x63543c] [0x6366f4] [0x412743] [0x65e6994] [0x63489d] [END_BACKTRACE] [FILE]: src/core/pose/full_model_info/FullModelInfo.cc [LINE]: 372 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Assertion `idx == 0` failed. [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.08+release.cb1caba [COMMIT_DATE]: 2020-02-21T14:46:08.581859 [APPLICATION]: stepwise.static.linuxgccrelease [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-16)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in:file:s=H0_minimize.pdb H1_minimize.pdb H2_minimize.pdb H3_minimize.pdb H4_minimize.pdb H5_minimize.pdb -in:file:native=2gdix_RNA.pdb -in:file:fasta=2gdix.fasta -in:file:input_res=1 2 3 4 5 76 77 78 79 80 6 7 8 9 39 40 41 42 12 13 14 27 28 29 16 17 18 24 25 26 48 49 50 71 72 73 54 55 56 57 64 65 66 67 -out:nstruct=10000 -out:file:silent=swm_2gdi_nores.out -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -constraints:cst_file=fade_0_50_cd10.cst -corrections:restore_talaris_behavior -rna:denovo:minimize_rna -stepwise:monte_carlo:cycles=10000 -full_model:motif_mode [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3af176f] [0x604b1b3] [0x60f1696] [0x51e0860] [0xf9ce81] [0xf9d948] [0xf76fa1] [0xf446b9] [0xf452e2] [0x39e8e64] [0x3a22be1] [0x3a23765] [0x63543c] [0x6366f4] [0x412743] [0x65e6994] [0x63489d] [END_BACKTRACE] [FILE]: src/core/pose/full_model_info/FullModelInfo.cc [LINE]: 372 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Assertion `idx == 0` failed. [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.08+release.cb1caba [COMMIT_DATE]: 2020-02-21T14:46:08.581859 [APPLICATION]: stepwise.static.linuxgccrelease [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-16)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in:file:s=H0_minimize.pdb H1_minimize.pdb H2_minimize.pdb H3_minimize.pdb H4_minimize.pdb H5_minimize.pdb -in:file:native=2gdix_RNA.pdb -in:file:fasta=2gdix.fasta -in:file:input_res=1 2 3 4 5 76 77 78 79 80 6 7 8 9 39 40 41 42 12 13 14 27 28 29 16 17 18 24 25 26 48 49 50 71 72 73 54 55 56 57 64 65 66 67 -out:nstruct=10000 -out:file:silent=swm_2gdi_nores.out -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -constraints:cst_file=fade_0_50_cd10.cst -corrections:restore_talaris_behavior -rna:denovo:minimize_rna -stepwise:monte_carlo:cycles=10000 -full_model:motif_mode [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3af176f] [0x604b1b3] [0x60f1696] [0x51e0860] [0xf9ce81] [0xf9d948] [0xf76fa1] [0xf446b9] [0xf452e2] [0x39e8e64] [0x3a22be1] [0x3a23765] [0x63543c] [0x6366f4] [0x412743] [0x65e6994] [0x63489d] [END_BACKTRACE] [FILE]: src/core/pose/full_model_info/FullModelInfo.cc [LINE]: 372 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Assertion `idx == 0` failed. [END_MESSAGE] [END_CRASH_REPORT]