############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2019.35+release.767c1ea [COMMIT_DATE]: 2019-08-30T10:52:08.483471 [APPLICATION]: /N/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/bin/AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.0.2) [OS]: GNU/Linux [COMPILER]: GCC version "8.3.0 20190222 (Cray Inc.)" [STDLIB]: libstdc++ version 20190222 [START_OPTIONS] -in:path:database=/N/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/database/ -in:file:native=./1elw.pdb -in:file:frag3=./aat000_03_05.200_v1_3 -in:file:frag9=./aat000_09_05.200_v1_3 -in:file:fasta=./1ELW.fasta -in:file:psipred_ss2=./t000_.psipred_ss2 -out:nstruct=1 -out:file:silent=./fold_silent.out -abinitio:relax -abinitio:use_filters -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libutility.so(utility::save_crash_report(char const*, std::__cxx11::basic_string, std::allocator > const&, int)+0x23) [0x7f7a5dfc5ed3] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libutility.so(utility::signal_handler(int)+0xd4) [0x7f7a5dfc5fe4] /lib64/libc.so.6(+0x34ff0) [0x7f7a5b871ff0] /opt/gcc/8.3.0/snos/lib64/libstdc++.so.6(std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)+0x19) [0x7f7a5c439629] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0xec) [0x7f7a63d25c7c] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x9a2) [0x7f7a6b0d67f2] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd7) [0x7f7a6b0df057] /N/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/bin/AbinitioRelax.mpi.linuxgccrelease() [0x401bf3] /lib64/libc.so.6(__libc_start_main+0xf5) [0x7f7a5b85d735] /N/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/bin/AbinitioRelax.mpi.linuxgccrelease() [0x401c99] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2019.35+release.767c1ea [COMMIT_DATE]: 2019-08-30T10:52:08.483471 [APPLICATION]: /N/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/bin/AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.0.2) [OS]: GNU/Linux [COMPILER]: GCC version "8.3.0 20190222 (Cray Inc.)" [STDLIB]: libstdc++ version 20190222 [START_OPTIONS] -in:path:database=/N/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/database/ -in:file:native=./1elw.pdb -in:file:frag3=./aat000_03_05.200_v1_3 -in:file:frag9=./aat000_09_05.200_v1_3 -in:file:fasta=./1ELW.fasta -in:file:psipred_ss2=./t000_.psipred_ss2 -out:nstruct=1 -out:file:silent=./fold_silent.out -abinitio:relax -abinitio:use_filters -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libutility.so(utility::save_crash_report(char const*, std::__cxx11::basic_string, std::allocator > const&, int)+0x23) [0x7fb296abfed3] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libutility.so(utility::signal_handler(int)+0xd4) [0x7fb296abffe4] /lib64/libc.so.6(+0x34ff0) [0x7fb29436bff0] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libcore.2.so(core::conformation::Conformation::set_torsion(core::id::TorsionID const&, double)+0x17c) [0x7fb297f95b7c] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libcore.5.so(core::fragment::BBTorsionSRFD::apply(core::kinematics::MoveMap const&, core::pose::Pose&, unsigned long) const+0x8a) [0x7fb29bf430aa] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libcore.5.so(core::fragment::FragData::apply(core::kinematics::MoveMap const&, core::pose::Pose&, unsigned long, unsigned long) const+0x72) [0x7fb29bf52012] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols.3.so(protocols::simple_moves::ClassicFragmentMover::apply_fragment(core::fragment::Frame const&, unsigned long, core::kinematics::MoveMap const&, core::pose::Pose&) const+0x12) [0x7fb29ea44422] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols.3.so(protocols::simple_moves::ClassicFragmentMover::apply(core::pose::Pose&)+0x2058) [0x7fb29ea4c6a8] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols.1.so(protocols::moves::TrialMover::apply(core::pose::Pose&)+0x31) [0x7fb29c8c38d1] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols_b.6.so(protocols::abinitio::ClassicAbinitio::do_stage1_cycles(core::pose::Pose&)+0x4dd) [0x7fb2a3bf618d] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols_b.6.so(protocols::abinitio::ClassicAbinitio::apply(core::pose::Pose&)+0x1054) [0x7fb2a3bf3534] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0xe58) [0x7fb2a3bd0ca8] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd7) [0x7fb2a3bd9057] /N/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/bin/AbinitioRelax.mpi.linuxgccrelease() [0x401bf3] /lib64/libc.so.6(__libc_start_main+0xf5) [0x7fb294357735] /N/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/bin/AbinitioRelax.mpi.linuxgccrelease() [0x401c99] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2019.35+release.767c1ea [COMMIT_DATE]: 2019-08-30T10:52:08.483471 [APPLICATION]: /N/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/bin/AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.0.2) [OS]: GNU/Linux [COMPILER]: GCC version "8.3.0 20190222 (Cray Inc.)" [STDLIB]: libstdc++ version 20190222 [START_OPTIONS] -in:path:database=/N/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/database/ -in:file:native=./1elw.pdb -in:file:frag3=./aat000_03_05.200_v1_3 -in:file:frag9=./aat000_09_05.200_v1_3 -in:file:fasta=./1ELW.fasta -in:file:psipred_ss2=./t000_.psipred_ss2 -out:nstruct=1 -out:file:silent=./fold_silent.out -abinitio:relax -abinitio:use_filters -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libutility.so(utility::save_crash_report(char const*, std::__cxx11::basic_string, std::allocator > const&, int)+0x23) [0x7f9938504ed3] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libutility.so(utility::signal_handler(int)+0xd4) [0x7f9938504fe4] /lib64/libc.so.6(+0x34ff0) [0x7f9935db0ff0] /opt/gcc/8.3.0/snos/lib64/libstdc++.so.6(std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)+0x19) [0x7f9936978629] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0xec) [0x7f993e264c7c] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x9a2) [0x7f99456157f2] /gpfs/hps/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/8.3/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd7) [0x7f994561e057] /N/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/bin/AbinitioRelax.mpi.linuxgccrelease() [0x401bf3] /lib64/libc.so.6(__libc_start_main+0xf5) [0x7f9935d9c735] /N/soft/cle6/rosetta/gnu/rosetta_src_2019.35.60890_bundle/main/source/bin/AbinitioRelax.mpi.linuxgccrelease() [0x401c99] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT]