[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2022.11+release.512e589
[COMMIT_DATE]: 2022-03-14T17:54:23.772418
[APPLICATION]: docking_protocol.mpi.linuxgccrelease
[MODE]: Release
[EXTRAS]: mpi (OpenMPI 3.1.6)
[OS]: GNU/Linux
[COMPILER]: GCC version "11.2.0"
[STDLIB]: libstdc++ version 20210728
[START_OPTIONS]
 -in:detect_disulf -in:detect_disulf_tolerance=1 -in:file:s=../input/4udt_AB_prepack.pdb -in:file:native=../input/4udt_xtal.pdb -out:nstruct=5000 -out:file:sc$

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libutility.so(backtrace_string[abi:cxx1$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libutility.so(utility::excn::Exception:$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libutility.so(utility::UtilityExitExcep$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libutility.so(utility::exit(char const*$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libcore.3.so(core::scoring::etable::cou$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libcore.3.so(core::scoring::etable::cou$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libcore.3.so(core::scoring::etable::Bas$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libcore.3.so(core::scoring::ScoreFuncti$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libcore.3.so(core::scoring::ScoreFuncti$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libcore.3.so(core::scoring::ScoreFuncti$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libcore.5.so(core::util::rebuild_disulf$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libcore.5.so(core::util::rebuild_fa_dis$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libcore.5.so(core::util::switch_to_resi$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libcore.5.so(core::util::switch_to_resi$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libprotocols.1.so(protocols::moves::Seq$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libprotocols_h.5.so(protocols::docking:$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libprotocols.1.so(protocols::jd2::JobDi$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libprotocols.1.so(protocols::jd2::JobDi$
/gpfs20/scratch/mb0261/rosetta/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/11.2/mpi/libprotocols.1.so(protocols::jd2::MPIFi$
docking_protocol.mpi.linuxgccrelease() [0x403d50]
docking_protocol.mpi.linuxgccrelease() [0x403698]
/lib64/libc.so.6(__libc_start_main+0xf5) [0x7f6b69d88555]
docking_protocol.mpi.linuxgccrelease() [0x403800]

[END_BACKTRACE]

[FILE]: src/core/scoring/etable/count_pair/CountPairFactory.cc
[LINE]: 220
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: Assertion `res2.is_bonded(res1)` failed.



[END_MESSAGE]
[END_CRASH_REPORT]